+Open data
-Basic information
Entry | Database: PDB / ID: 2rr8 | ||||||
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Title | Solution structure of calponin homology domain of IQGAP1 | ||||||
Components | IQGAP1 protein | ||||||
Keywords | PROTEIN BINDING / F-actin binding protein | ||||||
Function / homology | Function and homology information negative regulation of dephosphorylation / mitotic actomyosin contractile ring assembly actin filament organization / podocyte development / slit diaphragm / GTPase inhibitor activity / MAP-kinase scaffold activity / fibroblast migration / S100 protein binding / Nephrin family interactions / neuron projection extension ...negative regulation of dephosphorylation / mitotic actomyosin contractile ring assembly actin filament organization / podocyte development / slit diaphragm / GTPase inhibitor activity / MAP-kinase scaffold activity / fibroblast migration / S100 protein binding / Nephrin family interactions / neuron projection extension / RHOV GTPase cycle / cortical actin cytoskeleton / cellular response to platelet-derived growth factor stimulus / RHOC GTPase cycle / RHOQ GTPase cycle / regulation of mitotic cell cycle / phosphatidylinositol-3,4,5-trisphosphate binding / CDC42 GTPase cycle / RHOU GTPase cycle / platelet-derived growth factor receptor signaling pathway / RHOA GTPase cycle / lateral plasma membrane / RAC2 GTPase cycle / RHO GTPases activate IQGAPs / positive regulation of protein kinase activity / fibroblast growth factor receptor signaling pathway / regulation of cytokine production / cellular response to epidermal growth factor stimulus / ruffle / RAC1 GTPase cycle / cellular response to calcium ion / GTPase activator activity / protein serine/threonine kinase activator activity / secretory granule membrane / actin filament / Signaling by high-kinase activity BRAF mutants / MAP2K and MAPK activation / epidermal growth factor receptor signaling pathway / cytoplasmic side of plasma membrane / cytoplasmic ribonucleoprotein granule / small GTPase binding / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / Signaling by RAF1 mutants / Signaling by moderate kinase activity BRAF mutants / Paradoxical activation of RAF signaling by kinase inactive BRAF / Signaling downstream of RAS mutants / actin filament binding / cell migration / Signaling by BRAF and RAF1 fusions / cell cortex / midbody / growth cone / basolateral plasma membrane / protein phosphatase binding / microtubule / positive regulation of MAPK cascade / molecular adaptor activity / calmodulin binding / neuron projection / cadherin binding / ribonucleoprotein complex / apical plasma membrane / axon / protein domain specific binding / focal adhesion / calcium ion binding / Neutrophil degranulation / protein kinase binding / signal transduction / extracellular exosome / nucleus / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Model details | lowest energy, model 1 | ||||||
Authors | Umemoto, R. / Nishida, N. / Ogino, S. / Shimada, I. | ||||||
Citation | Journal: J.Biomol.Nmr / Year: 2010 Title: NMR structure of the calponin homology domain of human IQGAP1 and its implications for the actin recognition mode. Authors: Umemoto, R. / Nishida, N. / Ogino, S. / Shimada, I. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2rr8.cif.gz | 1.3 MB | Display | PDBx/mmCIF format |
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PDB format | pdb2rr8.ent.gz | 1.2 MB | Display | PDB format |
PDBx/mmJSON format | 2rr8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rr/2rr8 ftp://data.pdbj.org/pub/pdb/validation_reports/rr/2rr8 | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 22032.256 Da / Num. of mol.: 1 / Fragment: UNP RESIDUES 26-210 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: IQGAP1 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) / References: UniProt: Q6P1N4, UniProt: P46940*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 0.17 / pH: 7.4 / Pressure: ambient / Temperature: 310 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model: AVANCE / Field strength: 800 MHz |
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-Processing
NMR software | Name: CYANA / Version: 2.1 / Developer: Guntert, Mumenthaler, Wuthrich / Classification: refinement |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 |
NMR representative | Selection criteria: lowest energy |
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 / Representative conformer: 1 |