+Open data
-Basic information
Entry | Database: PDB / ID: 2jtn | ||||||
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Title | NMR Solution Structure of a ldb1-LID:Lhx3-LIM complex | ||||||
Components | LIM domain-binding protein 1, LIM/homeobox protein Lhx3 | ||||||
Keywords | PROTEIN BINDING/TRANSCRIPTION / intramolecular (fusion) protein-protein complex / PROTEIN BINDING-TRANSCRIPTION COMPLEX | ||||||
Function / homology | Function and homology information medial motor column neuron differentiation / prolactin secreting cell differentiation / somatotropin secreting cell differentiation / spinal cord motor neuron cell fate specification / ventral spinal cord interneuron specification / regulation of kinase activity / spinal cord association neuron differentiation / cellular component assembly / negative regulation of erythrocyte differentiation / thyroid-stimulating hormone-secreting cell differentiation ...medial motor column neuron differentiation / prolactin secreting cell differentiation / somatotropin secreting cell differentiation / spinal cord motor neuron cell fate specification / ventral spinal cord interneuron specification / regulation of kinase activity / spinal cord association neuron differentiation / cellular component assembly / negative regulation of erythrocyte differentiation / thyroid-stimulating hormone-secreting cell differentiation / positive regulation of hemoglobin biosynthetic process / cerebellar Purkinje cell differentiation / head development / epithelial structure maintenance / primitive erythrocyte differentiation / transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery / beta-catenin-TCF complex / pituitary gland development / RUNX1 regulates transcription of genes involved in differentiation of HSCs / LIM domain binding / gastrulation with mouth forming second / dorsal/ventral pattern formation / motor neuron axon guidance / anterior/posterior axis specification / regulation of focal adhesion assembly / cell leading edge / somatic stem cell population maintenance / inner ear development / positive regulation of cell adhesion / hair follicle development / regulation of cell migration / cerebellum development / placenta development / transcription coregulator binding / positive regulation of transcription elongation by RNA polymerase II / RNA polymerase II transcription regulatory region sequence-specific DNA binding / lung development / transcription coactivator binding / neuron differentiation / Wnt signaling pathway / RNA polymerase II transcription regulator complex / : / nervous system development / DNA-binding transcription activator activity, RNA polymerase II-specific / DNA-binding transcription factor binding / transcription regulator complex / RNA polymerase II-specific DNA-binding transcription factor binding / sequence-specific DNA binding / transcription by RNA polymerase II / transcription coactivator activity / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / cell adhesion / negative regulation of DNA-templated transcription / apoptotic process / chromatin binding / chromatin / regulation of transcription by RNA polymerase II / negative regulation of apoptotic process / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / enzyme binding / protein homodimerization activity / positive regulation of transcription by RNA polymerase II / protein-containing complex / zinc ion binding / nucleoplasm / identical protein binding / nucleus Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | SOLUTION NMR / simulated annealing, torsion angle dynamics, cartesian dynamics | ||||||
Authors | Lee, C. / Nancarrow, A.L. / Mackay, J.P. / Matthews, J.M. | ||||||
Citation | Journal: Embo J. / Year: 2008 Title: Implementing the LIM code: the structural basis for cell type-specific assembly of LIM-homeodomain complexes Authors: Bhati, M. / Lee, C. / Nancarrow, A.L. / Lee, M. / Craig, V.J. / Bach, I. / Guss, J.M. / Mackay, J.P. / Matthews, J.M. | ||||||
History |
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Remark 999 | SEQUENCE The sequence is composed of LIM domain-binding protein 1 and LIM/homeobox protein Lhx3 ... SEQUENCE The sequence is composed of LIM domain-binding protein 1 and LIM/homeobox protein Lhx3 with a linker, GGSGGHMGSGG. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2jtn.cif.gz | 1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb2jtn.ent.gz | 919.3 KB | Display | PDB format |
PDBx/mmJSON format | 2jtn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jt/2jtn ftp://data.pdbj.org/pub/pdb/validation_reports/jt/2jtn | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 20263.014 Da / Num. of mol.: 1 Fragment: Fusion of Ldb1 residues 295-340 and Lhx3 LIM zinc-binding domains 1 and 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / Gene: Ldb1, Nli, Lhx3, Lim-3, Lim3, Plim / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) / References: UniProt: P70662, UniProt: P50481 |
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#2: Chemical | ChemComp-ZN / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
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