+Open data
-Basic information
Entry | Database: PDB / ID: 2gw6 | ||||||
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Title | NMR structure of the human tRNA endonuclease SEN15 subunit | ||||||
Components | tRNA-splicing endonuclease subunit Sen15 | ||||||
Keywords | PROTEIN BINDING / SEN15_HUMAN / tRNA Endonuclease / Structural Genomics / PSI / Protein Structure Initiative / Center for Eukaryotic Structural Genomics / CESG | ||||||
Function / homology | Function and homology information tRNA splicing, via endonucleolytic cleavage and ligation / tRNA processing in the nucleus / mRNA processing / nucleic acid binding / nucleolus / nucleoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / torsion angle dynamics,simulated annealing,distance geometry | ||||||
Authors | Song, J. / Markley, J.L. / Center for Eukaryotic Structural Genomics (CESG) | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2007 Title: Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold. Authors: Song, J. / Markley, J.L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2gw6.cif.gz | 1.6 MB | Display | PDBx/mmCIF format |
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PDB format | pdb2gw6.ent.gz | 1.4 MB | Display | PDB format |
PDBx/mmJSON format | 2gw6.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gw/2gw6 ftp://data.pdbj.org/pub/pdb/validation_reports/gw/2gw6 | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 13785.757 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: TSEN15, C1orf19, SEN15 / Plasmid: PVP13 / Production host: Escherichia coli (E. coli) / Strain (production host): Rossetta2(DE3) / References: UniProt: Q8WW01 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions | Ionic strength: 100 mM NaCl / pH: 6.0 / Pressure: 1 atm / Temperature: 303 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics,simulated annealing,distance geometry Software ordinal: 1 Details: STRUCTURES ARE BASED ON A TOTAL OF 4516 NOE RESTRAINTS (1704 INTRA, 1038 SEQUENTIAL, 802 MEDIUM, 862 LONG RANGE INTERMOLECULAR AND 110 INTERMOLECULAR), 182 H BOND RESTRAINTS, AND 326 PHI AND ...Details: STRUCTURES ARE BASED ON A TOTAL OF 4516 NOE RESTRAINTS (1704 INTRA, 1038 SEQUENTIAL, 802 MEDIUM, 862 LONG RANGE INTERMOLECULAR AND 110 INTERMOLECULAR), 182 H BOND RESTRAINTS, AND 326 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 |