Entry Database : PDB / ID : 2ckw Structure visualization Downloads & linksTitle The 2.3 A resolution structure of the Sapporo virus RNA dependant RNA polymerase. ComponentsRNA-DIRECTED RNA POLYMERASE RNA-dependent RNA polymerase Details Keywords HYDROLASE / NUCLEOTIDE-BINDING / NUCLEOTIDYLTRANSFERASE / COVALENT PROTEIN-RNA LINKAGE / POLYMERASE / RNA ELONGATION / TRANSFERASE ACTIVITY / MUTANT / CAPSID PROTEIN / RNA REPLICATION / STRUCTURAL PROTEIN / PROTEASE / HELICASE / TRANSFERASE / RNA-DIRECTED RNA POLYMERASE / POLYPROTEIN / ATP-BINDING / THIOL PROTEASEFunction / homology Function and homology informationFunction Domain/homology Component
calicivirin / ribonucleoside triphosphate phosphatase activity / viral capsid / nucleoside-triphosphate phosphatase / host cell cytoplasm / RNA helicase activity / DNA replication / RNA-directed RNA polymerase / viral RNA genome replication / cysteine-type endopeptidase activity ... calicivirin / ribonucleoside triphosphate phosphatase activity / viral capsid / nucleoside-triphosphate phosphatase / host cell cytoplasm / RNA helicase activity / DNA replication / RNA-directed RNA polymerase / viral RNA genome replication / cysteine-type endopeptidase activity / RNA-dependent RNA polymerase activity / DNA-templated transcription / proteolysis / RNA binding / ATP binding Similarity search - Function : / Viral genome-linked protein / Caliciviridae (CV) 3C-like protein profile. / Peptidase C24, Calicivirus polyprotein Orf1 / 2C endopeptidase (C24) cysteine protease family / Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #3230 / Norovirus peptidase C37 / Southampton virus-type processing peptidase / Mitochondrial Import Receptor Subunit Tom20; Chain A - #20 / Mitochondrial Import Receptor Subunit Tom20; Chain A ... : / Viral genome-linked protein / Caliciviridae (CV) 3C-like protein profile. / Peptidase C24, Calicivirus polyprotein Orf1 / 2C endopeptidase (C24) cysteine protease family / Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #3230 / Norovirus peptidase C37 / Southampton virus-type processing peptidase / Mitochondrial Import Receptor Subunit Tom20; Chain A - #20 / Mitochondrial Import Receptor Subunit Tom20; Chain A / Helicase/polymerase/peptidase polyprotein, Calicivirus-type / Calicivirus coat protein / Calicivirus coat protein / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Reverse transcriptase/Diguanylate cyclase domain / Helicase, superfamily 3, single-stranded RNA virus / Superfamily 3 helicase of positive ssRNA viruses domain profile. / Helicase, superfamily 3, single-stranded DNA/RNA virus / RNA helicase / Picornavirus/Calicivirus coat protein / Helix non-globular / Viral coat protein subunit / Special / RNA-directed RNA polymerase, C-terminal domain / Viral RNA-dependent RNA polymerase / Reverse transcriptase/Diguanylate cyclase domain / RNA-directed RNA polymerase, catalytic domain / RdRp of positive ssRNA viruses catalytic domain profile. / Alpha-Beta Plaits / DNA/RNA polymerase superfamily / Peptidase S1, PA clan / Up-down Bundle / P-loop containing nucleoside triphosphate hydrolase / 2-Layer Sandwich / Mainly Alpha / Alpha Beta Similarity search - Domain/homologyBiological species SAPPORO VIRUSMethod X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.3 Å DetailsAuthors Fullerton, S.W.B. / Tucker, P.A. / Rohayem, J. / Coutard, B. / Gebhardt, J. / Gorbalenya, A. / Canard, B. CitationJournal : J.Virol. / Year : 2007Title : Structural and Functional Characterization of Sapovirus RNA-Dependent RNA Polymerase.Authors : Fullerton, S.W.B. / Blaschke, M. / Coutard, B. / Gebhardt, J. / Gorbalenya, A. / Canard, B. / Tucker, P.A. / Rohayem, J. History Deposition Apr 24, 2006 Deposition site : PDBE / Processing site : PDBERevision 1.0 Nov 29, 2006 Provider : repository / Type : Initial releaseRevision 1.1 May 8, 2011 Group : Version format complianceRevision 1.2 Jul 13, 2011 Group : Version format complianceRevision 1.3 Jul 24, 2019 Group : Data collection / Category : diffrn_source / Item : _diffrn_source.pdbx_synchrotron_siteRevision 1.4 Oct 16, 2019 Group : Data collection / Other / Category : pdbx_database_status / reflns_shellItem : _pdbx_database_status.status_code_sf / _reflns_shell.Rmerge_I_obsRevision 1.5 Dec 13, 2023 Group : Data collection / Database references / Refinement descriptionCategory : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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