+Open data
-Basic information
Entry | Database: PDB / ID: 1xtc | ||||||
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Title | CHOLERA TOXIN | ||||||
Components | (CHOLERA TOXIN) x 3 | ||||||
Keywords | TOXIN / ENTEROTOXIN | ||||||
Function / homology | Function and homology information host cell surface binding / galactose binding / glycosyltransferase activity / Transferases; Glycosyltransferases; Pentosyltransferases / catalytic complex / localization / positive regulation of tyrosine phosphorylation of STAT protein / nucleotidyltransferase activity / toxin activity / periplasmic space ...host cell surface binding / galactose binding / glycosyltransferase activity / Transferases; Glycosyltransferases; Pentosyltransferases / catalytic complex / localization / positive regulation of tyrosine phosphorylation of STAT protein / nucleotidyltransferase activity / toxin activity / periplasmic space / lipid binding / host cell plasma membrane / extracellular space / extracellular region / membrane Similarity search - Function | ||||||
Biological species | Vibrio cholerae (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.4 Å | ||||||
Authors | Zhang, R.-G. / Westbrook, E. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1995 Title: The three-dimensional crystal structure of cholera toxin. Authors: Zhang, R.G. / Scott, D.L. / Westbrook, M.L. / Nance, S. / Spangler, B.D. / Shipley, G.G. / Westbrook, E.M. #1: Journal: J.Mol.Biol. / Year: 1995 Title: The 2.4 A Crystal Structure of Cholera Toxin B Subunit Pentamer: Choleragenoid Authors: Zhang, R.G. / Westbrook, M.L. / Westbrook, E.M. / Scott, D.L. / Otwinowski, Z. / Maulik, P.R. / Reed, R.A. / Shipley, G.G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1xtc.cif.gz | 156.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1xtc.ent.gz | 129.9 KB | Display | PDB format |
PDBx/mmJSON format | 1xtc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xt/1xtc ftp://data.pdbj.org/pub/pdb/validation_reports/xt/1xtc | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 21841.975 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: COMMERCIALLY OBTAINED FROM LIST BIOLOGICAL LABORATORY, CAMPBER CA95008 Source: (natural) Vibrio cholerae (bacteria) / Strain: 569B / References: UniProt: P01555 | ||||
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#2: Protein/peptide | Mass: 5404.996 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: COMMERCIALLY OBTAINED FROM LIST BIOLOGICAL LABORATORY, CAMPBER CA95008 Source: (natural) Vibrio cholerae (bacteria) / Strain: 569B / References: UniProt: P01555 | ||||
#3: Protein | Mass: 11692.346 Da / Num. of mol.: 5 / Source method: isolated from a natural source Details: COMMERCIALLY OBTAINED FROM LIST BIOLOGICAL LABORATORY, CAMPBER CA95008 Source: (natural) Vibrio cholerae (bacteria) / Strain: 569B / References: UniProt: P01556 #4: Water | ChemComp-HOH / | Compound details | CHOLERA TOXIN CONTAINS 3 KINDS OF CHAINS: AN ALPHA AND A GAMMA CHAIN (FROM THE SAME PRECURSOR ...CHOLERA TOXIN CONTAINS 3 KINDS OF CHAINS: AN ALPHA AND A GAMMA CHAIN (FROM THE SAME PRECURSOR MOLECULE), LINKED BY AN INTERCHAIN | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.28 Å3/Da / Density % sol: 46.1 % |
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Crystal grow | *PLUS Method: other / Details: Spangler, B.D., (1989) Biochemistry, 28, 1333. |
-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: SIEMENS-NICOLET X100 / Detector: AREA DETECTOR / Date: Aug 15, 1989 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 26200 / % possible obs: 88.4 % / Rmerge(I) obs: 0.048 |
Reflection | *PLUS Highest resolution: 2.4 Å / Num. measured all: 60810 / Rmerge(I) obs: 0.048 |
-Processing
Software |
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Refinement | Highest resolution: 2.4 Å / σ(F): 1.5 /
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Displacement parameters | Biso mean: 20.37 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.4 Å
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Refine LS restraints |
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Software | *PLUS Name: PROFFT / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 10 Å / Rfactor obs: 0.185 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |