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Yorodumi- PDB-1ttn: Solution structure of the ubiquitin-like domain of human DC-UBP f... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ttn | ||||||
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Title | Solution structure of the ubiquitin-like domain of human DC-UBP from dendritic cells | ||||||
Components | dendritic cell-derived ubiquitin-like protein | ||||||
Keywords | SIGNALING PROTEIN / Ubiquitin-like Domain / DC-UBP / Solution Structure | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Model type details | minimized average | ||||||
Authors | Hu, H.Y. | ||||||
Citation | Journal: Protein Sci. / Year: 2005 Title: Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells Authors: Gao, Y.G. / Song, A.X. / Shi, Y.H. / Chang, Y.G. / Liu, S.X. / Yu, Y.Z. / Cao, X.T. / Lin, D.H. / Hu, H.Y. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ttn.cif.gz | 388.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ttn.ent.gz | 333.5 KB | Display | PDB format |
PDBx/mmJSON format | 1ttn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tt/1ttn ftp://data.pdbj.org/pub/pdb/validation_reports/tt/1ttn | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12180.951 Da / Num. of mol.: 1 / Fragment: ubiquitin-like domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Plasmid: pET-22b(+) / Species (production host): Escherichia coli / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): BL21 / References: UniProt: Q8WUN7 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined using triple-resonance NMR spectroscopy |
-Sample preparation
Details |
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Sample conditions | pH: 5.6 / Temperature: 298 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: the structures are based on 901 NOE-derived distance constraints,83 dihedral angle restraints,60 distance restraints from hydrogen bonds. | ||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 150 / Conformers submitted total number: 15 |