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Yorodumi- PDB-1tpe: COMPARISON OF THE STRUCTURES AND THE CRYSTAL CONTACTS OF TRYPANOS... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1tpe | ||||||
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Title | COMPARISON OF THE STRUCTURES AND THE CRYSTAL CONTACTS OF TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE IN FOUR DIFFERENT CRYSTAL FORMS | ||||||
Components | TRIOSEPHOSPHATE ISOMERASE | ||||||
Keywords | ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) | ||||||
Function / homology | Function and homology information glycosome / triose-phosphate isomerase / triose-phosphate isomerase activity / gluconeogenesis / glycolytic process / cytoplasm Similarity search - Function | ||||||
Biological species | Trypanosoma brucei brucei (eukaryote) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.1 Å | ||||||
Authors | Noble, M.E.M. / Radha Kishan, K.V. / Zeelen, J.Ph. / Wierenga, R.K. | ||||||
Citation | Journal: Protein Sci. / Year: 1994 Title: Comparison of the structures and the crystal contacts of trypanosomal triosephosphate isomerase in four different crystal forms. Authors: Kishan, K.V. / Zeelen, J.P. / Noble, M.E. / Borchert, T.V. / Wierenga, R.K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tpe.cif.gz | 59.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tpe.ent.gz | 44.2 KB | Display | PDB format |
PDBx/mmJSON format | 1tpe.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tp/1tpe ftp://data.pdbj.org/pub/pdb/validation_reports/tp/1tpe | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 26951.947 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Trypanosoma brucei brucei (eukaryote) / Species: Trypanosoma brucei / Strain: brucei / References: UniProt: P04789, triose-phosphate isomerase |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.49 Å3/Da / Density % sol: 50.66 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Method: vapor diffusion, hanging drop / pH: 8 | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 2.1 Å / Num. obs: 18131 / % possible obs: 78.1 % / Rmerge(I) obs: 0.063 |
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Reflection shell | *PLUS Highest resolution: 2.13 Å / Lowest resolution: 2.18 Å / % possible obs: 57.6 % |
-Processing
Software |
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Refinement | Resolution: 2.1→15 Å / σ(F): 0 /
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Refinement step | Cycle: LAST / Resolution: 2.1→15 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR/TNT / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Num. reflection all: 18131 / Rfactor all: 0.155 / Rfactor Rwork: 0.155 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 2.55 |