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Yorodumi- PDB-1th5: Solution structure of C-terminal domain of NifU-like protein from... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1th5 | ||||||
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Title | Solution structure of C-terminal domain of NifU-like protein from Oryza sativa | ||||||
Components | NifU1 | ||||||
Keywords | Structural genomics / unknown function / IRON-SULFUR CLUSTER BINDING / PROGRAM FOR RICE GENOME RESEARCH | ||||||
Function / homology | Function and homology information protein maturation by iron-sulfur cluster transfer / iron-sulfur cluster assembly / chloroplast stroma / 4 iron, 4 sulfur cluster binding / iron ion binding / mitochondrion Similarity search - Function | ||||||
Biological species | Oryza sativa (Asian cultivated rice) | ||||||
Method | SOLUTION NMR / distance geometr,y simulated annealing, torsion angle dynamics | ||||||
Authors | Kumeta, H. / Ogura, K. / Asayama, M. / Katoh, S. / Katoh, E. / Inagaki, F. | ||||||
Citation | Journal: J.Biomol.Nmr / Year: 2007 Title: The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A. Authors: Kumeta, H. / Ogura, K. / Asayama, M. / Katoh, S. / Katoh, E. / Teshima, K. / Inagaki, F. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1th5.cif.gz | 533.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1th5.ent.gz | 468.7 KB | Display | PDB format |
PDBx/mmJSON format | 1th5.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/th/1th5 ftp://data.pdbj.org/pub/pdb/validation_reports/th/1th5 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 8105.713 Da / Num. of mol.: 1 / Fragment: residues 154-226 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Oryza sativa (Asian cultivated rice) / Plasmid: pDEST32a / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: Q84LK7 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions | Ionic strength: 100mM NaCl / pH: 6.0 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: distance geometr,y simulated annealing, torsion angle dynamics Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 |