[English] 日本語
Yorodumi- PDB-1swm: X-RAY CRYSTAL STRUCTURE OF THE FERRIC SPERM WHALE MYOGLOBIN: IMID... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1swm | ||||||
---|---|---|---|---|---|---|---|
Title | X-RAY CRYSTAL STRUCTURE OF THE FERRIC SPERM WHALE MYOGLOBIN: IMIDAZOLE COMPLEX AT 2.0 ANGSTROMS RESOLUTION | ||||||
Components | MYOGLOBIN | ||||||
Keywords | OXYGEN TRANSPORT | ||||||
Function / homology | Function and homology information hydrogen peroxide mediated signaling pathway / oxygen carrier activity / oxygen binding / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | Physeter catodon (sperm whale) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.8 Å | ||||||
Authors | Rizzi, M. / Ascenzi, P. / Coda, A. / Brunori, M. / Bolognesi, M. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1991 Title: X-ray crystal structure of the ferric sperm whale myoglobin: imidazole complex at 2.0 A resolution. Authors: Lionetti, C. / Guanziroli, M.G. / Frigerio, F. / Ascenzi, P. / Bolognesi, M. #1: Journal: J.Mol.Biol. / Year: 1990 Title: X-Ray Crystal Structure of the Fluoride Derivative of Aplysia Limacina Ferric Myoglobin at 2.0 Angstroms Resolution: Stabilization of the Fluoride Ion by Hydrogen Bonding to Arg 66 (E10) Authors: Bolognesi, M. / Coda, A. / Frigerio, F. / Gatti, G. / Ascenzi, P. / Brunori, M. #2: Journal: J.Mol.Biol. / Year: 1989 Title: Aplysia Limacima Myoglobin: Crystallographic Analysis at 1.6 Angstroms Resolution Authors: Bolognesi, M. / Onesti, S. / Gatti, G. / Coda, A. / Ascenzi, P. / Brunori, M. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1swm.cif.gz | 46.5 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1swm.ent.gz | 32.7 KB | Display | PDB format |
PDBx/mmJSON format | 1swm.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sw/1swm ftp://data.pdbj.org/pub/pdb/validation_reports/sw/1swm | HTTPS FTP |
---|
-Related structure data
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
| ||||||||
Atom site foot note | 1: CONFORMATIONAL CHANGE OF THE DISTAL RESIDUE HIS 64 AND RESIDUES ARG 45 AND ASP 60. |
-Components
#1: Protein | Mass: 17234.951 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Physeter catodon (sperm whale) / References: UniProt: P02185 |
---|---|
#2: Chemical | ChemComp-AZI / |
#3: Chemical | ChemComp-SO4 / |
#4: Chemical | ChemComp-HEM / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 1.94 Å3/Da / Density % sol: 36.63 % |
---|
-Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 1.8→11 Å /
| ||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→11 Å
| ||||||||||||||||||||||||||||||
Refine LS restraints |
|