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Yorodumi- PDB-1rzw: The Solution Structure of the Archaeglobus fulgidis protein AF209... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1rzw | ||||||
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Title | The Solution Structure of the Archaeglobus fulgidis protein AF2095. Northeast Structural Genomics Consortium target GR4 | ||||||
Components | Protein AF2095(GR4) | ||||||
Keywords | Structural Genomics / Unknown function / Beta-sheet of 4 parallel / anti-parallel beta-strands and 3 alpha-helices / PSI / Protein Structure Initiative / Northeast Structural Genomics Consortium / NESG | ||||||
Function / homology | Function and homology information peptidyl-tRNA hydrolase / aminoacyl-tRNA hydrolase activity / translation / cytoplasm Similarity search - Function | ||||||
Biological species | Archaeoglobus fulgidus (archaea) | ||||||
Method | SOLUTION NMR / distance geometry simulated annealing, molecular dynamics | ||||||
Authors | Powers, R. / Acton, T.B. / Huang, Y.J. / Liu, J. / Ma, L. / Rost, B. / Chiang, Y. / Cort, J.R. / Kennedy, M.A. / Montelione, G.T. / Northeast Structural Genomics Consortium (NESG) | ||||||
Citation | Journal: Protein Sci. / Year: 2005 Title: Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes Authors: Powers, R. / Mirkovic, N. / Goldsmith-Fischman, S. / Acton, T.B. / Chiang, Y. / Huang, Y.J. / Ma, L. / Rajan, P.K. / Cort, J.R. / Kennedy, M.A. / Liu, J. / Rost, B. / Honig, B. / Murray, D. / Montelione, G.T. #1: Journal: J.Biomol.Nmr / Year: 2004 Title: 1H, 13C and 15N assignments for the Archaeglobus fulgidis protein AF2095. Authors: Powers, R. / Acton, T.B. / Chiang, Y. / Paranji, R. / Cort, J.R. / Kennedy, M.A. / Liu, J. / Ma, L. / Rost, B. / Montelione, G.T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rzw.cif.gz | 50.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1rzw.ent.gz | 40.6 KB | Display | PDB format |
PDBx/mmJSON format | 1rzw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rz/1rzw ftp://data.pdbj.org/pub/pdb/validation_reports/rz/1rzw | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 13578.943 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Archaeoglobus fulgidus (archaea) / Gene: AF2095 / Plasmid: pET21 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3)+ Magic / References: UniProt: O28185 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02% NaN3, 5% D2O pH 6.5 Solvent system: 95% H2O/5% D2O |
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Sample conditions | Ionic strength: 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02% NaN3 pH: 6.5 / Pressure: ambient / Temperature: 313 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | ||||||||||||||||||||
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Radiation wavelength | Relative weight: 1 | ||||||||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: distance geometry simulated annealing, molecular dynamics Software ordinal: 1 | ||||||||||||||||||||||||
NMR ensemble | Conformers submitted total number: 1 |