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Yorodumi- PDB-1qn0: SOLUTION STRUCTURE OF DESULFOVIBRIO GIGAS FERROCYTOCHROME C3, NMR... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1qn0 | ||||||
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Title | SOLUTION STRUCTURE OF DESULFOVIBRIO GIGAS FERROCYTOCHROME C3, NMR, 20 STRUCTURES | ||||||
Components | CYTOCHROME C3 | ||||||
Keywords | ELECTRON TRANSPORT / HEMEPROTEIN / CYTOCHROME C3 / REDOX-BOHR EFFECT / REDOX COOPERATIVITY / ENERGY TRANSDUCTION | ||||||
Function / homology | Function and homology information anaerobic respiration / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | DESULFOVIBRIO GIGAS (bacteria) | ||||||
Method | SOLUTION NMR / RESTRAINED TORSION ANGLE DYNAMICS WITH SIMULATED ANNEALING | ||||||
Authors | Messias, A.C. / Teodoro, M.L. / Brennan, L. / Legall, J. / Santos, H. / Xavier, A.V. / Turner, D.L. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2000 Title: Structural Basis for the Network of Functional Cooperativities in Cytochrome C3 from Desulfovibrio Gigas: Solution Structures of the Oxidised and Reduced States Authors: Brennan, L. / Turner, D.L. / Messias, A.C. / Teodoro, M.L. / Legall, J. / Santos, H. / Xavier, A.V. #1: Journal: Biochemistry / Year: 1998 Title: Functional and Mechanistic Studies of Cytochrome C3 from Desulfovibrio Gigas: Thermodynamics of a 'Proton Thruster' Authors: Louro, R.O. / Catarino, T. / Turner, D.L. / Picarra-Pereira, M.A. / Pacheco, I. / Legall, J. / Xavier, A.V. #2: Journal: Protein Sci. / Year: 1996 Title: Cytochromes C3 from Desulfovibrio Gigas: Crystal Structure at 1.8 A Resolution and Evidence for a Specific Calcium-Binding Site Authors: Matias, P.M. / Morais, J. / Carrondo, M.A. / Wilson, K. / Dauter, Z. / Sieker, L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qn0.cif.gz | 753.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qn0.ent.gz | 653.6 KB | Display | PDB format |
PDBx/mmJSON format | 1qn0.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qn/1qn0 ftp://data.pdbj.org/pub/pdb/validation_reports/qn/1qn0 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12016.550 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: CLASS III OF C-TYPE CYTOCHROMES, FULLY REDUCED FORM Source: (natural) DESULFOVIBRIO GIGAS (bacteria) / Cellular location: PERIPLASM / References: UniProt: P00133 | ||
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#2: Chemical | ChemComp-HEC / Sequence details | RESIDUE 40 WAS FOUND TO BE GLN | |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Sample conditions | pH: 7.3 / Temperature: 303 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker AMX / Manufacturer: Bruker / Model: AMX / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: RESTRAINED TORSION ANGLE DYNAMICS WITH SIMULATED ANNEALING Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION MENTIONED. INDYANA REFERENCE:D.L.TURNER, L.BRENNAN,H.E.MEYER,C.LOHAUS, C.SIETHOFF,H.S.COSTA,B.GONZALEZ, H.SANTOS,J.E.SUAREZ(1999) EUR.J.BIOCHEM., 264,833-839. | |||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 600 / Conformers submitted total number: 20 |