[English] 日本語
Yorodumi- PDB-1ly7: The solution structure of the the c-terminal domain of frataxin, ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ly7 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | The solution structure of the the c-terminal domain of frataxin, the protein responsible for friedreich ataxia | |||||||||
Components | frataxin | |||||||||
Keywords | UNKNOWN FUNCTION / alpha-beta | |||||||||
Function / homology | Function and homology information regulation of ferrochelatase activity / [4Fe-4S] cluster assembly / proprioception / iron incorporation into metallo-sulfur cluster / positive regulation of lyase activity / positive regulation of succinate dehydrogenase activity / L-cysteine desulfurase complex / Mitochondrial iron-sulfur cluster biogenesis / mitochondrial iron-sulfur cluster assembly complex / positive regulation of aconitate hydratase activity ...regulation of ferrochelatase activity / [4Fe-4S] cluster assembly / proprioception / iron incorporation into metallo-sulfur cluster / positive regulation of lyase activity / positive regulation of succinate dehydrogenase activity / L-cysteine desulfurase complex / Mitochondrial iron-sulfur cluster biogenesis / mitochondrial iron-sulfur cluster assembly complex / positive regulation of aconitate hydratase activity / iron chaperone activity / negative regulation of organ growth / iron-sulfur cluster assembly complex / Mitochondrial protein import / [2Fe-2S] cluster assembly / adult walking behavior / oxidative phosphorylation / response to iron ion / embryo development ending in birth or egg hatching / iron-sulfur cluster assembly / heme biosynthetic process / muscle cell cellular homeostasis / negative regulation of multicellular organism growth / organ growth / positive regulation of catalytic activity / ferroxidase / negative regulation of release of cytochrome c from mitochondria / ferroxidase activity / protein autoprocessing / mitochondrion organization / ferric iron binding / ferrous iron binding / 2 iron, 2 sulfur cluster binding / cellular response to hydrogen peroxide / iron ion transport / positive regulation of cell growth / intracellular iron ion homeostasis / mitochondrial matrix / positive regulation of cell population proliferation / negative regulation of apoptotic process / mitochondrion / cytosol Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Authors | Musco, G. / Stier, G. / Kolmerer, B. / Adinolfi, S. / Martin, S. / Frenkiel, T. / Gibson, T. / Pastore, A. | |||||||||
Citation | Journal: Structure Fold.Des. / Year: 2000 Title: Towards a structural understanding of Friedreich's ataxia: the solution structure of frataxin Authors: Musco, G. / Stier, G. / Kolmerer, B. / Adinolfi, S. / Martin, S. / Frenkiel, T. / Gibson, T. / Pastore, A. #1: Journal: J.BIOMOL.NMR / Year: 1999 Title: Assignment of the 1H, 15N, and 13C resonances of the C-terminal domain of frataxin, the protein responsible for friedreich ataxia Authors: Musco, G. / De Tommasi, T. / Stier, G. / Kolmerer, B. / Bottomley, M. / Adinolfi, S. / Muskett, F.W. / Gibson, T.J. / Frenkiel, T.A. / Pastore, A. | |||||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1ly7.cif.gz | 544.4 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1ly7.ent.gz | 455.4 KB | Display | PDB format |
PDBx/mmJSON format | 1ly7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ly/1ly7 ftp://data.pdbj.org/pub/pdb/validation_reports/ly/1ly7 | HTTPS FTP |
---|
-Related structure data
Similar structure data | |
---|---|
Other databases |
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein | Mass: 13505.929 Da / Num. of mol.: 1 / Fragment: C-TERMINAL DOMAIN (91-210) Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Plasmid: pET / Species (production host): Escherichia coli / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): bl21 / References: UniProt: Q16595 |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-Sample preparation
Details | Contents: 1 MM FRATAXIN. U-15N 10 MM PHOSPHATE BUFFER (PH 6.8)90% H2O, 10% D2O Solvent system: h2o |
---|---|
Sample conditions | Ionic strength: 10 mM phosphate / pH: 6.8 / Pressure: ambient / Temperature: 300 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Radiation wavelength | Relative weight: 1 | ||||||||||||||||||||
NMR spectrometer |
|
-Processing
NMR software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: simulated annealing / Software ordinal: 1 / Details: ARIA | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with favorable non-bond energy Conformers calculated total number: 50 / Conformers submitted total number: 15 |