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Yorodumi- PDB-1dvf: IDIOTOPIC ANTIBODY D1.3 FV FRAGMENT-ANTIIDIOTOPIC ANTIBODY E5.2 F... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1dvf | ||||||
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Title | IDIOTOPIC ANTIBODY D1.3 FV FRAGMENT-ANTIIDIOTOPIC ANTIBODY E5.2 FV FRAGMENT COMPLEX | ||||||
Components |
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Keywords | COMPLEX (IDIOTOPE-ANTIIDIOTOPE) / IMMUNOGLOBULIN | ||||||
Function / homology | Function and homology information immunoglobulin complex / immunoglobulin mediated immune response / antigen binding / adaptive immune response / immune response / extracellular space Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.9 Å | ||||||
Authors | Braden, B.C. / Fields, B.A. / Ysern, X. / Dall'Acqua, W. / Goldbaum, F.A. / Poljak, R.J. / Mariuzza, R.A. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1996 Title: Crystal structure of an Fv-Fv idiotope-anti-idiotope complex at 1.9 A resolution. Authors: Braden, B.C. / Fields, B.A. / Ysern, X. / Dall'Acqua, W. / Goldbaum, F.A. / Poljak, R.J. / Mariuzza, R.A. #1: Journal: Nature / Year: 1995 Title: Molecular Basis of Antigen Mimicry by an Anti-Idiotope Authors: Fields, B.A. / Goldbaum, F.A. / Ysern, X. / Poljak, R.J. / Mariuzza, R.A. #2: Journal: J.Mol.Biol. / Year: 1994 Title: Crystallization and Preliminary X-Ray Diffraction Study of an Idiotope-Anti-Idiotope Fv-Fv Complex Authors: Goldbaum, F.A. / Fields, B.A. / Cauerhff, A. / Ysern, X. / Houdusse, A. / Eisele, J.L. / Poljak, R.J. / Mariuzza, R.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1dvf.cif.gz | 99.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1dvf.ent.gz | 80.5 KB | Display | PDB format |
PDBx/mmJSON format | 1dvf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dv/1dvf ftp://data.pdbj.org/pub/pdb/validation_reports/dv/1dvf | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Components on special symmetry positions |
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-Components
-Antibody , 4 types, 4 molecules ABCD
#1: Antibody | Mass: 11858.171 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: IGG1, KAPPA / Source: (gene. exp.) Mus musculus (house mouse) / Strain: BALB-C / Production host: Escherichia coli (E. coli) / References: UniProt: P01635 |
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#2: Antibody | Mass: 12857.275 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: IGG1, KAPPA / Source: (gene. exp.) Mus musculus (house mouse) / Strain: BALB/C / Production host: Escherichia coli (E. coli) / References: UniProt: P01820 |
#3: Antibody | Mass: 11770.961 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: IGG1, KAPPA / Source: (gene. exp.) Mus musculus (house mouse) / Strain: BALB-C / Production host: Escherichia coli (E. coli) / References: UniProt: P01646 |
#4: Antibody | Mass: 13320.795 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: IGG1, KAPPA / Source: (gene. exp.) Mus musculus (house mouse) / Strain: BALB/C / Production host: Escherichia coli (E. coli) / References: UniProt: A0NA69*PLUS |
-Non-polymers , 2 types, 160 molecules
#5: Chemical | #6: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.09 Å3/Da / Density % sol: 60.21 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS Method: vapor diffusion, hanging drop / Details: Goldbaum, F.A., (1994) J.Mol.Biol., 241, 739. | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: RIGAKU / Detector: IMAGE PLATE |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 41404 / % possible obs: 82.5 % / Redundancy: 2.6 % / Rmerge(I) obs: 0.085 |
Reflection | *PLUS Highest resolution: 1.9 Å / Num. measured all: 105969 |
-Processing
Software |
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Refinement | Resolution: 1.9→7 Å / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 1.9→7 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor Rfree: 0.235 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |