+Open data
-Basic information
Entry | Database: PDB / ID: 1div | ||||||
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Title | RIBOSOMAL PROTEIN L9 | ||||||
Components | RIBOSOMAL PROTEIN L9 | ||||||
Keywords | RIBOSOMAL PROTEIN / RRNA-BINDING | ||||||
Function / homology | Function and homology information rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex Similarity search - Function | ||||||
Biological species | Geobacillus stearothermophilus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.6 Å | ||||||
Authors | Hoffman, D.W. / Cameron, C. / Davies, C. / Gerchman, S.E. / Kycia, J.H. / Porter, S. / Ramakrishnan, V. / White, S.W. | ||||||
Citation | Journal: EMBO J. / Year: 1994 Title: Crystal structure of prokaryotic ribosomal protein L9: a bi-lobed RNA-binding protein. Authors: Hoffman, D.W. / Davies, C. / Gerchman, S.E. / Kycia, J.H. / Porter, S.J. / White, S.W. / Ramakrishnan, V. #1: Journal: Biochem.Cell Biol. / Year: 1995 Title: Structures of Prokaryotic Ribosomal Proteins: Implications for RNA Binding and Evolution Authors: Ramakrishnan, V. / Davies, C. / Gerchman, S.E. / Golden, B.L. / Hoffmann, D.W. / Jaishree, T.N. / Kycia, J.H. / Porter, S. / White, S.W. #2: Journal: Proc.Natl.Acad.Sci.USA / Year: 1994 Title: A Mutation in Ribosomal Protein L9 Affects Ribosomal Hopping During Translation of Gene 60 from Bacteriophage T4 Authors: Herbst, K.L. / Nichols, L.M. / Gesteland, R.F. / Weiss, R.B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1div.cif.gz | 44 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1div.ent.gz | 32.6 KB | Display | PDB format |
PDBx/mmJSON format | 1div.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/di/1div ftp://data.pdbj.org/pub/pdb/validation_reports/di/1div | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 16341.037 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: PROKARYOTIC / Source: (natural) Geobacillus stearothermophilus (bacteria) / References: UniProt: P02417 |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.77 Å3/Da / Density % sol: 67.41 % | |||||||||||||||
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Crystal grow | *PLUS Temperature: 22 ℃ / Method: vapor diffusion, hanging drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.6 Å / Num. obs: 7789 / Num. measured all: 25621 / Rmerge(I) obs: 0.072 |
-Processing
Software |
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Refinement | Resolution: 2.6→7 Å / Rfactor Rfree: 0.276 / Rfactor Rwork: 0.217 / Rfactor obs: 0.217 / σ(F): 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→7 Å
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Refine LS restraints |
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