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Yorodumi- PDB-1cyc: THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cyc | |||||||||
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Title | THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3 ANGSTROMS RESOLUTION. II. STRUCTURE AND FUNCTION | |||||||||
Components | FERROCYTOCHROME C | |||||||||
Keywords | ELECTRON TRANSPORT | |||||||||
Function / homology | Function and homology information respirasome / mitochondrial intermembrane space / electron transfer activity / heme binding / metal ion binding Similarity search - Function | |||||||||
Biological species | Katsuwonus pelamis (skipjack tuna) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 2.3 Å | |||||||||
Authors | Tanaka, N. / Yamane, T. / Tsukihara, T. / Ashida, T. / Kakudo, M. | |||||||||
Citation | Journal: J.Biochem.(Tokyo) / Year: 1975 Title: The crystal structure of bonito (katsuo) ferrocytochrome c at 2.3 A resolution. II. Structure and function. Authors: Tanaka, N. / Yamane, T. / Tsukihara, T. / Ashida, T. / Kakudo, M. #1: Journal: J.Biochem.(Tokyo) / Year: 1973 Title: Oxidation of a Ferrocytochrome C in the Crystalline State-Structural Change and Anion Binding Authors: Tsukihara, T. / Yamane, T. / Tanaka, N. / Ashida, T. / Kakudo, M. #2: Journal: J.Biochem.(Tokyo) / Year: 1973 Title: The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution Authors: Ashida, T. / Tanaka, N. / Yamane, T. / Tsukihara, T. / Kakudo, M. #3: Journal: J.Biochem.(Tokyo) / Year: 1971 Title: The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 4 Angstroms Resolution Authors: Ashida, T. / Ueki, T. / Tsukihara, T. / Sugihara, A. / Takano, T. / Kakudo, M. #4: Journal: J.Biochem.(Tokyo) / Year: 1971 Title: The Amino Acid Sequence of Cytochrome C from Bonito (Katsuwonus Pelamis, Linnaeus) Authors: Nakayama, T. / Titani, K. / Narita, K. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cyc.cif.gz | 59.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cyc.ent.gz | 30.6 KB | Display | PDB format |
PDBx/mmJSON format | 1cyc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cy/1cyc ftp://data.pdbj.org/pub/pdb/validation_reports/cy/1cyc | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given / Matrix: (1), |
-Components
#1: Protein | Mass: 11404.102 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Katsuwonus pelamis (skipjack tuna) / References: UniProt: P00025 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.02 Å3/Da / Density % sol: 39.18 % |
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Crystal grow | *PLUS Method: other / Details: Ashida, T., (1971) J. Biochem., 70, 913. |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
-Processing
Refinement | Highest resolution: 2.3 Å | ||||||||||||
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Refinement step | Cycle: LAST / Highest resolution: 2.3 Å
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