[English] 日本語
Yorodumi- PDB-1cry: APPLICATION OF AN AUTOMATIC MOLECULAR REPLACEMENT PROCEDURE TO CR... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cry | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | APPLICATION OF AN AUTOMATIC MOLECULAR REPLACEMENT PROCEDURE TO CRYSTAL STRUCTURE OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS | |||||||||
Components | CYTOCHROME C2 | |||||||||
Keywords | ELECTRON TRANSPORT(HEME PROTEIN) | |||||||||
Function / homology | Function and homology information photosynthesis / electron transfer activity / heme binding / metal ion binding Similarity search - Function | |||||||||
Biological species | Blastochloris viridis (bacteria) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 3 Å | |||||||||
Authors | Miki, K. / Sogabe, S. | |||||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1994 Title: Application of an automatic molecular-replacement procedure to crystal structure analysis of cytochrome c2 from Rhodopseudomonas viridis. Authors: Miki, K. / Sogabe, S. / Uno, A. / Ezoe, T. / Kasai, N. / Saeda, M. / Matsuura, Y. / Miki, M. | |||||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1cry.cif.gz | 28.8 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1cry.ent.gz | 22.2 KB | Display | PDB format |
PDBx/mmJSON format | 1cry.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cr/1cry ftp://data.pdbj.org/pub/pdb/validation_reports/cr/1cry | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-Components
#1: Protein | Mass: 11667.220 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Blastochloris viridis (bacteria) / References: UniProt: P00083 |
---|---|
#2: Chemical | ChemComp-HEC / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 2.9 Å3/Da / Density % sol: 57.52 % |
---|---|
Crystal grow | *PLUS Method: other / Details: Miki, K., (1986) J. Mol. Biol., 191, 579. |
-Data collection
Radiation | Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 3 Å / Num. obs: 2870 / % possible obs: 88 % / Num. measured all: 8667 / Rmerge(I) obs: 0.073 |
-Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor Rwork: 0.219 / Rfactor obs: 0.219 / Highest resolution: 3 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 3 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 10 Å / Rfactor obs: 0.219 / Rfactor Rwork: 0.219 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 0.04 |