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Yorodumi- PDB-1cdb: STRUCTURE OF THE GLYCOSYLATED ADHESION DOMAIN OF HUMAN T LYMPHOCY... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cdb | ||||||
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Title | STRUCTURE OF THE GLYCOSYLATED ADHESION DOMAIN OF HUMAN T LYMPHOCYTE GLYCOPROTEIN CD2 | ||||||
Components | CD2 | ||||||
Keywords | T LYMPHOCYTE ADHESION GLYCOPROTEIN | ||||||
Function / homology | Function and homology information positive regulation of myeloid dendritic cell activation / membrane raft polarization / natural killer cell mediated cytotoxicity / natural killer cell activation / heterotypic cell-cell adhesion / regulation of T cell differentiation / T cell activation / positive regulation of interleukin-8 production / Cell surface interactions at the vascular wall / cytoplasmic side of plasma membrane ...positive regulation of myeloid dendritic cell activation / membrane raft polarization / natural killer cell mediated cytotoxicity / natural killer cell activation / heterotypic cell-cell adhesion / regulation of T cell differentiation / T cell activation / positive regulation of interleukin-8 production / Cell surface interactions at the vascular wall / cytoplasmic side of plasma membrane / cell-cell adhesion / receptor tyrosine kinase binding / : / cell-cell junction / positive regulation of type II interferon production / positive regulation of tumor necrosis factor production / signaling receptor activity / cell surface receptor signaling pathway / external side of plasma membrane / signaling receptor binding / apoptotic process / Golgi apparatus / cell surface / protein-containing complex / extracellular region / nucleoplasm / identical protein binding / plasma membrane Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Wyss, D.F. / Withka, J.M. / Recny, M.A. / Wagner, G. | ||||||
Citation | Journal: Structure / Year: 1993 Title: Structure of the glycosylated adhesion domain of human T lymphocyte glycoprotein CD2. Authors: Withka, J.M. / Wyss, D.F. / Wagner, G. / Arulanandam, A.R. / Reinherz, E.L. / Recny, M.A. #1: Journal: Biochemistry / Year: 1993 Title: 1H Resonance Assignments and Secondary Structure of the 13.6 KDa Glycosylated Adhesion Domain of Human CD2 Authors: Wyss, D.F. / Withka, J.M. / Knoppers, M.H. / Sterne, K.A. / Recny, M.A. / Wagner, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cdb.cif.gz | 315 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cdb.ent.gz | 266.5 KB | Display | PDB format |
PDBx/mmJSON format | 1cdb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cd/1cdb ftp://data.pdbj.org/pub/pdb/validation_reports/cd/1cdb | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Atom site foot note | 1: HIS 72 - LEU 73 MODEL 2 OMEGA =147.36 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 2: LEU 73 - LYS 74 MODEL 2 OMEGA =140.50 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 3: LYS 74 - THR 75 MODEL 2 OMEGA =149.04 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 4: LEU 73 - LYS 74 MODEL 3 OMEGA =128.69 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 5: ALA 6 - LEU 7 MODEL 4 OMEGA =126.22 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 6: TRP 35 - GLU 36 MODEL 4 OMEGA =215.60 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 7: ASP 58 - THR 59 MODEL 4 OMEGA =131.43 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 8: SER 23 - PHE 24 MODEL 6 OMEGA =149.75 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 9: LEU 13 - GLY 14 MODEL 7 OMEGA =213.37 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 10: ARG 48 - LYS 49 MODEL 7 OMEGA =215.06 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 11: ASP 58 - THR 59 MODEL 7 OMEGA =135.63 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 12: ILE 70 - LYS 71 MODEL 7 OMEGA =218.98 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 13: LEU 73 - LYS 74 MODEL 7 OMEGA =217.70 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 14: LYS 37 - THR 38 MODEL 9 OMEGA =101.92 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 15: PHE 54 - LYS 55 MODEL 9 OMEGA =144.10 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 16: LYS 57 - ASP 58 MODEL 9 OMEGA =210.13 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 17: GLU 50 - LYS 51 MODEL 11 OMEGA =212.81 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 18: ASP 58 - THR 59 MODEL 11 OMEGA =141.21 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 19: ASP 58 - THR 59 MODEL 13 OMEGA =114.88 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 20: TYR 60 - LYS 61 MODEL 13 OMEGA =147.74 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 21: PHE 63 - LYS 64 MODEL 13 OMEGA =122.96 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 22: ILE 70 - LYS 71 MODEL 13 OMEGA =211.08 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 23: LEU 73 - LYS 74 MODEL 16 OMEGA =215.49 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 24: ASP 58 - THR 59 MODEL 17 OMEGA =218.09 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 25: LYS 57 - ASP 58 MODEL 18 OMEGA =134.69 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 26: ASP 58 - THR 59 MODEL 18 OMEGA =107.45 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION | |||||||||
NMR ensembles |
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-Components
#1: Protein | Mass: 12453.215 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: POTENTIAL / Organ: OVARY / References: UniProt: P06729 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
NMR software | Name: DGII / Developer: BIOSYM TECHNOLOGIES / Classification: refinement |
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NMR ensemble | Conformers submitted total number: 18 |