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Yorodumi- PDB-1b64: SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMA... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1b64 | ||||||
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Title | SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES | ||||||
Components | ELONGATION FACTOR 1-BETA | ||||||
Keywords | GUANINE NUCLEOTIDE EXCHANGE FACTOR / G-PROTEIN / TRANSLATION ELONGATION | ||||||
Function / homology | Function and homology information Eukaryotic Translation Elongation / eukaryotic translation elongation factor 1 complex / translational elongation / translation elongation factor activity / guanyl-nucleotide exchange factor activity / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Perez, J.M.J. / Siegal, G. / Kriek, J. / Hard, K. / Dijk, J. / Canters, G.W. / Moller, W. | ||||||
Citation | Journal: Structure Fold.Des. / Year: 1999 Title: The solution structure of the guanine nucleotide exchange domain of human elongation factor 1beta reveals a striking resemblance to that of EF-Ts from Escherichia coli. Authors: Perez, J.M. / Siegal, G. / Kriek, J. / Hard, K. / Dijk, J. / Canters, G.W. / Moller, W. #1: Journal: J.Biomol.NMR / Year: 1998 Title: 1H, 15N and 13C Chemical Shift Assignment of the Guanine Nucleotide Exchange Domain of Human Elongation Factor-One Beta Authors: Perez, J.M. / Kriek, J. / Dijk, J. / Moller, W. / Siegal, G. / Hard, K. / Kalverda, A.P. / Canters, G.W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1b64.cif.gz | 549.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1b64.ent.gz | 476.5 KB | Display | PDB format |
PDBx/mmJSON format | 1b64.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/b6/1b64 ftp://data.pdbj.org/pub/pdb/validation_reports/b6/1b64 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 10148.631 Da / Num. of mol.: 1 / Fragment: GUANINE EXCHANGE FACTOR DOMAIN Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Cell line: BL21 / Plasmid: PET11A / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: P24534 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: VARIOUS |
NMR details | Text: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY OF 13C, 15N-LABELED EF-1BETA. |
-Sample preparation
Details | Contents: 95% H2O AND 5% D2O |
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Sample conditions | Ionic strength: 100 mM / pH: 6.9 / Pressure: 1 atm / Temperature: 303 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DMX600 / Manufacturer: Bruker / Model: DMX600 / Field strength: 600 MHz |
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-Processing
Software |
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NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. | ||||||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 50 / Conformers submitted total number: 20 |