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Yorodumi- PDB-1b1v: NMR STRUCTURE OF PSP1, PLASMATOCYTE-SPREADING PEPTIDE FROM PSEUDO... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1b1v | ||||||
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Title | NMR STRUCTURE OF PSP1, PLASMATOCYTE-SPREADING PEPTIDE FROM PSEUDOPLUSIA INCLUDENS | ||||||
Components | PROTEIN (PLASMATOCYTE-SPREADING PEPTIDE) | ||||||
Keywords | CYTOKINE / INSECT CYTOKINE / PLASMATOCYTE-SPREADING / EGF-LIKE | ||||||
Function / homology | Paralytic/GBP/PSP peptide / Paralytic/GBP/PSP peptide / cytokine activity / extracellular space / Plasmatocyte-spreading peptide Function and homology information | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Authors | Volkman, B.F. / Clark, K.D. / Anderson, M.E. / Pech, L.L. / Markley, J.L. / Strand, M.R. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1999 Title: Structure of the insect cytokine peptide plasmatocyte-spreading peptide 1 from Pseudoplusia includens. Authors: Volkman, B.F. / Anderson, M.E. / Clark, K.D. / Hayakawa, Y. / Strand, M.R. / Markley, J.L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1b1v.cif.gz | 175.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1b1v.ent.gz | 122.1 KB | Display | PDB format |
PDBx/mmJSON format | 1b1v.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/b1/1b1v ftp://data.pdbj.org/pub/pdb/validation_reports/b1/1b1v | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2511.835 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE IS NATURALLY FOUND IN THE HEMOLYMPH TISSUE OF PSEUDOPLUSIA INCLUDENS (SOYBEAN LOOPER (MOTH)). References: UniProt: O61704 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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NMR details | Text: BOTH: QUADRATURE IN INDIRECT DIM. WAS OBTAINED WITH STATES-TPPI. WATER SUPPRESION WAS ACHIEVED WITH A WATERGATE SEQ. WITH A 3-9-19 SELECTIVE INVERSION |
-Sample preparation
Sample conditions | Ionic strength: 20 mM SODIUM PHOSPHATE / pH: 6.0 / Pressure: 1 atm / Temperature: 283 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: REFINEMENT DETAILS ARE IN THE SUBMITTED FILES AND IN THE JRNL CITATION ABOVE. | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: LOWEST TARGET FUNCTION / Conformers calculated total number: 60 / Conformers submitted total number: 30 |