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- PDB-188l: SPECIFICITY OF LIGAND BINDING IN A BURIED NON-POLAR CAVITY OF T4 ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 188l | ||||||
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Title | SPECIFICITY OF LIGAND BINDING IN A BURIED NON-POLAR CAVITY OF T4 LYSOZYME: LINKAGE OF DYNAMICS AND STRUCTURAL PLASTICITY | ||||||
![]() | T4 LYSOZYME | ||||||
![]() | HYDROLASE (O-GLYCOSYL) | ||||||
Function / homology | ![]() viral release from host cell by cytolysis / peptidoglycan catabolic process / cell wall macromolecule catabolic process / ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Morton, A. / Matthews, B.W. | ||||||
![]() | ![]() Title: Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: linkage of dynamics and structural plasticity. Authors: Morton, A. / Matthews, B.W. #1: ![]() Title: Energetic Origins of Specificity of Ligand Binding in an Interior Cavity of T4 Lysozyme Authors: Morton, A. / Baase, W.A. / Matthews, B.W. #2: ![]() Title: Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution Authors: Weaver, L.H. / Matthews, B.W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.7 KB | Display | ![]() |
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PDB format | ![]() | 33.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 181lC ![]() 182lC ![]() 183lC ![]() 184lC ![]() 185lC ![]() 186lC ![]() 187lC ![]() 1nhbC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18586.283 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||||
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#2: Chemical | ![]() #3: Chemical | ChemComp-HED / | #4: Chemical | ChemComp-OXE / | ![]() #5: Water | ChemComp-HOH / | ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.78 Å3/Da / Density % sol: 55.68 % | ||||||||||||||||||||
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Crystal grow![]() | *PLUS Method: vapor diffusion, hanging drop / PH range low: 7.1 / PH range high: 6.3 | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 20 Å / Num. obs: 31858 / % possible obs: 68 % / Observed criterion σ(I): 0 |
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Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.8→20 Å / σ(F): 0 /
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Refinement step | Cycle: LAST / Resolution: 1.8→20 Å
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Refine LS restraints |
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