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Yorodumi- PDB-135l: X-RAY STRUCTURE OF MONOCLINIC TURKEY EGG LYSOZYME AT 1.3 ANGSTROM... -
+Open data
-Basic information
Entry | Database: PDB / ID: 135l | |||||||||
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Title | X-RAY STRUCTURE OF MONOCLINIC TURKEY EGG LYSOZYME AT 1.3 ANGSTROMS RESOLUTION | |||||||||
Components | TURKEY EGG WHITE LYSOZYME | |||||||||
Keywords | HYDROLASE(O-GLYCOSYL) | |||||||||
Function / homology | Function and homology information glycosaminoglycan binding / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to Gram-positive bacterium / extracellular space / identical protein binding / cytoplasm Similarity search - Function | |||||||||
Biological species | Meleagris gallopavo (turkey) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 1.3 Å | |||||||||
Authors | Harata, K. | |||||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1993 Title: X-ray structure of monoclinic turkey egg lysozyme at 1.3 A resolution. Authors: Harata, K. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 135l.cif.gz | 34.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb135l.ent.gz | 26.7 KB | Display | PDB format |
PDBx/mmJSON format | 135l.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/35/135l ftp://data.pdbj.org/pub/pdb/validation_reports/35/135l | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 14228.105 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Meleagris gallopavo (turkey) / Tissue: EGG WHITE / References: UniProt: P00703, lysozyme |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.92 Å3/Da / Density % sol: 36.07 % | ||||||||||||||||||||
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Crystal grow | *PLUS Method: batch method | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.3 Å / % possible obs: 91.3 % / Num. measured all: 25232 / Rmerge(I) obs: 0.051 |
-Processing
Software |
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Refinement | Resolution: 1.3→10 Å / Rfactor Rwork: 0.189 / Rfactor obs: 0.189 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.3→10 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.5 Å / Lowest resolution: 10 Å / σ(F): 3 / Rfactor obs: 0.193 / Rfactor Rwork: 0.193 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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