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Yorodumi- PDB-124d: STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 124d | ||||||
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Title | STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA | ||||||
Components |
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Keywords | DNA-RNA HYBRID / DNA-RNA COMPLEX / DOUBLE HELIX | ||||||
Function / homology | DNA / RNA Function and homology information | ||||||
Method | SOLUTION NMR / RESTRAINED MOLECULAR DYNAMICS, NOESY SIMULATION REFINEMENT | ||||||
Authors | Fedoroff, O.Y. / Salazar, M. / Reid, B.R. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1993 Title: Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA Authors: Fedoroff, O.Y. / Salazar, M. / Reid, B.R. #1: Journal: Biochemistry / Year: 1993 Title: The DNA Strand in DNA-RNA Hybrid Duplexes is Neither B-Form Nor A-Form in Solution Authors: Salazar, M. / Fedoroff, O.Y. / Miller, J.M. / Ribeiro, N.S. / Reid, B.R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 124d.cif.gz | 16.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb124d.ent.gz | 11.4 KB | Display | PDB format |
PDBx/mmJSON format | 124d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/24/124d ftp://data.pdbj.org/pub/pdb/validation_reports/24/124d | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 2426.617 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: CHEMICALLY SYNTHESIZED |
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#2: RNA chain | Mass: 2526.561 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: CHEMICALLY SYHTHESIZED |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
Refinement | Method: RESTRAINED MOLECULAR DYNAMICS, NOESY SIMULATION REFINEMENT Software ordinal: 1 Details: 132 NOE RESTRAINTS AND 20 HYDROGEN BONDS WERE USED. |
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NMR ensemble | Conformers calculated total number: 1 / Conformers submitted total number: 1 |