+Open data
-Basic information
Entry | Database: PDB / ID: 2lv0 | ||||||||||||||||||||
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Title | Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA | ||||||||||||||||||||
Components | RNA (5'-R(*Keywords | RNA / ribosome / 23S rRNA / methylation / erythromycin resistance | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / simulated annealing | Model details | closest to the average, model 1 | Authors | Nikonowicz, E.P. / Wang, J. / Moran, S. / Donarski, J. | Citation | Journal: To be Published | Title: Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA Authors: Moran, S. / Donarski, J. / Wang, J. / Nikonowicz, E.P. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lv0.cif.gz | 170 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lv0.ent.gz | 141.8 KB | Display | PDB format |
PDBx/mmJSON format | 2lv0.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lv/2lv0 ftp://data.pdbj.org/pub/pdb/validation_reports/lv/2lv0 | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 7717.646 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: RNA was prepared by in vitro transcription |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | |||||||||||||||||||||
NMR constraints | NA sugar pucker constraints total count: 22 / NOE constraints total: 345 | |||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 11 |