+Open data
-Basic information
Entry | Database: PDB / ID: 1ygw | ||||||
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Title | NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES | ||||||
Components | RIBONUCLEASE T1 | ||||||
Keywords | HYDROLASE / RIBONUCLEASE / ENDONUCLEASE / RIBONUCLEASE T1 PRECURSOR / ENDORIBONUCLEASE | ||||||
Function / homology | Function and homology information hyphal tip / ribonuclease T1 activity / ribonuclease T1 / cell septum / endonuclease activity / lyase activity / RNA binding Similarity search - Function | ||||||
Biological species | Aspergillus oryzae (mold) | ||||||
Method | SOLUTION NMR / VARIABLE TARGET FUNCTION | ||||||
Authors | Pfeiffer, S. / Karimi-Nejad, Y. / Ruterjans, H. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1997 Title: Limits of NMR structure determination using variable target function calculations: ribonuclease T1, a case study. Authors: Pfeiffer, S. / Karimi-Nejad, Y. / Ruterjans, H. #1: Journal: Q.Magn.Reson.Biol.Med. / Year: 1996 Title: Complete 1H, 15N and 13C Resonance Assignment of Ribonuclease T1: Secondary Structure and Backbone Dynamics as Derived from the Chemical Shifts Authors: Pfeiffer, S. / Engelke, J. / Ruterjans, H. #2: Journal: Biochemistry / Year: 1994 Title: Conformation of Valine Side Chains in Ribonuclease T1 Determined by NMR Studies of Homonuclear and Heteronuclear 3J Coupling Constants Authors: Karimi-Nejad, Y. / Schmidt, J.M. / Ruterjans, H. / Schwalbe, H. / Griesinger, C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ygw.cif.gz | 959.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ygw.ent.gz | 828.1 KB | Display | PDB format |
PDBx/mmJSON format | 1ygw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/yg/1ygw ftp://data.pdbj.org/pub/pdb/validation_reports/yg/1ygw | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 11094.694 Da / Num. of mol.: 1 / Mutation: ISOENZYME WITH LYSINE AT POSITION 25 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Aspergillus oryzae (mold) / Gene: RIBONUCLEASE T1 / Plasmid: PA2T1-1 / Gene (production host): RIBONUCLEASE T1 / Production host: Escherichia coli (E. coli) / Strain (production host): DH5 ALPHA / References: UniProt: P00651, EC: 3.1.27.3 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Sample conditions | pH: 5.5 / Temperature: 313 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: VARIABLE TARGET FUNCTION / Software ordinal: 1 | |||||||||
NMR ensemble | Conformer selection criteria: SEE JRNL REFERENCE / Conformers calculated total number: 50 / Conformers submitted total number: 34 |