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Yorodumi Species
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Taxonomy info

NameRattus norvegicus
Name *1Rattus norvegicus
Image *2

rat, Norway rat, brown rat, rats

Other names *3common name: brown rat / rat / rats / GenBank common name: Norway rat / equivalent name: Rattus sp. strain Wistar / misspelling: Rattus norvegicus8 / Rattus norwegicus / includes: Buffalo rat / Rattus PC12 clone IS ...Buffalo rat / Rattus PC12 clone IS / Sprague-Dawley rat / Wistar rats / laboratory rat / zitter rats / others: Gunn rats / Rattus rattiscus
NCBI Taxonomy ID10116
Lineage *3cellular organisms > Eukaryota > Opisthokonta > Metazoa > Eumetazoa > Bilateria > Deuterostomia > Chordata > Craniata > Vertebrata > Gnathostomata > Teleostomi > Euteleostomi > Sarcopterygii > Dipnotetrapodomorpha > Tetrapoda > Amniota > Mammalia > Theria > Eutheria > Boreoeutheria > Euarchontoglires > Glires > Rodentia > Myomorpha > Muroidea > Muridae > Murinae > Rattus
WikipediaWikipedia - Brown rat: The brown rat , also referred to as the common rat, street rat, sewer rat, Hanover rat, Norway rat, Norwegian rat, or wharf rat is one of the best known and most common rats.

One of the largest muroids, it is a brown or grey rodent with a body up to 25 cm (10 in) long, and a similar tail length; the male weighs on average 350 g (12 oz) and the female 250 g (9 oz). Thought to have originated in northern China, this rodent has now spread to all continents except Antarctica, and is the dominant rat in Europe and much of North America—making it by at least this particular definition the most successful mammal on the planet alongside humans...

Commentmammal
References*1: NCBI Taxonomy
*2: Taxonomy icon (c) Database Center for Life Science licensed under CC Attribution2.1 Japan
*3: NCBI Taxonomy

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About Yorodumi Species

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News

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi

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Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

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Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

  • Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.: EMDB / PDB / SASBDB / Comparison of 3 databanks

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