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Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

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Taxonomy info

NameLeptotrichia buccalis
Other names *1scientific name: Leptotrichia buccalis / synonym: Leptothrix buccalis
Lineage *1cellular organisms > Bacteria > Fusobacteria > Fusobacteriia > Fusobacteriales > Leptotrichiaceae > Leptotrichia
Yorodumi annotationbacteria
References*1: NCBI Taxonomy
LinksNCBI taxonomy ID: 40542

EMDB entries

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Electron cryo-microscopy structure of LbuCas13a-crRNA binary complex

PDB entries

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Cupin 2 conserved barrel domain protein from Leptotrichia buccalis

The crystal structure of a functionally unknown protein Lebu_0176 from Leptotrichia buccalis C-1013-b

Crystal structure of purine nucleoside phosphorylase from Leptotrichia buccalis C-1013-b, NYSGRC Target 029767.

Crystal structure of LbuCas13a-crRNA-target RNA ternary complex

SASBDB entries

No item found

About Yorodumi Species


Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

Jun 16, 2017. Omokage search with filter

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Sep 15, 2016. EM Navigator & Yorodumi renewed

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

  • Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.: EMDB / PDB / SASBDB / Comparison of 3 databanks

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