[English] 日本語
Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

+
Search query

Name, Taxonomy-ID, or Keywords:

e.g. E. coli, ebola, influenza, cow, crab-eating macaque, spinach, peanut, cobra, pyrococcus

-
Result of keyword search

-
Taxonomy info

NameEscherichia coli bl21
Image *1ImageEscherichia coli
Other names *2scientific name: Escherichia coli BL21 / equivalent name: Escherichia coli str. BL21, Escherichia coli strain BL21
Lineage *2cellular organisms > Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli
Yorodumi annotationbacteria
References*1: Taxonomy icon (c) Database Center for Life Science licensed under CC Attribution2.1 Japan
*2: NCBI Taxonomy
LinksNCBI taxonomy ID: 511693

-
EMDB entries

No item found

-
PDB entries

Showing all 7 items

-
SASBDB entries

No item found

+
About Yorodumi Species

-
News

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

-
Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

  • Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.: EMDB / PDB / SASBDB / Comparison of 3 databanks

Read more