+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 1fin | ||||||
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タイトル | CYCLIN A-CYCLIN-DEPENDENT KINASE 2 COMPLEX | ||||||
要素 |
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キーワード | COMPLEX (TRANSFERASE/CYCLIN) / COMPLEX (TRANSFERASE-CYCLIN) / CYCLIN (サイクリン) / CDK / PHOSPHORYLATION (リン酸化) / COMPLEX (TRANSFERASE-CYCLIN) complex | ||||||
機能・相同性 | 機能・相同性情報 Phosphorylation of proteins involved in the G2/M transition by Cyclin A:Cdc2 complexes / cyclin A2-CDK1 complex / cell cycle G1/S phase transition / cellular response to luteinizing hormone stimulus / mitotic cell cycle phase transition / Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1 / cellular response to leptin stimulus / male pronucleus / female pronucleus / cellular response to cocaine ...Phosphorylation of proteins involved in the G2/M transition by Cyclin A:Cdc2 complexes / cyclin A2-CDK1 complex / cell cycle G1/S phase transition / cellular response to luteinizing hormone stimulus / mitotic cell cycle phase transition / Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1 / cellular response to leptin stimulus / male pronucleus / female pronucleus / cellular response to cocaine / response to glucagon / cyclin-dependent protein serine/threonine kinase regulator activity / cellular response to insulin-like growth factor stimulus / positive regulation of DNA biosynthetic process / cochlea development / cyclin A1-CDK2 complex / cyclin E2-CDK2 complex / cyclin E1-CDK2 complex / cellular response to platelet-derived growth factor stimulus / cyclin A2-CDK2 complex / positive regulation of DNA-templated DNA replication initiation / G2期 / cyclin-dependent protein kinase activity / Y染色体 / Phosphorylation of proteins involved in G1/S transition by active Cyclin E:Cdk2 complexes / positive regulation of heterochromatin formation / p53-Dependent G1 DNA Damage Response / X染色体 / PTK6 Regulates Cell Cycle / regulation of anaphase-promoting complex-dependent catabolic process / regulation of DNA replication / Defective binding of RB1 mutants to E2F1,(E2F2, E2F3) / centriole replication / Regulation of APC/C activators between G1/S and early anaphase / centrosome duplication / Telomere Extension By Telomerase / G0 and Early G1 / Activation of the pre-replicative complex / cyclin-dependent protein kinase holoenzyme complex / cellular response to nitric oxide / カハール体 / サイクリン依存性キナーゼ / animal organ regeneration / cyclin-dependent protein serine/threonine kinase activity / TP53 Regulates Transcription of Genes Involved in G1 Cell Cycle Arrest / Activation of ATR in response to replication stress / Cyclin E associated events during G1/S transition / Cyclin A/B1/B2 associated events during G2/M transition / Cyclin A:Cdk2-associated events at S phase entry / condensed chromosome / mitotic G1 DNA damage checkpoint signaling / regulation of G2/M transition of mitotic cell cycle / cyclin binding / post-translational protein modification / meiotic cell cycle / male germ cell nucleus / response to organic substance / cellular response to estradiol stimulus / Cdc20:Phospho-APC/C mediated degradation of Cyclin A / G1/S transition of mitotic cell cycle / potassium ion transport / DNA Damage/Telomere Stress Induced Senescence / CDK-mediated phosphorylation and removal of Cdc6 / SCF(Skp2)-mediated degradation of p27/p21 / 遺伝的組換え / Orc1 removal from chromatin / Transcriptional regulation of granulopoiesis / Cyclin D associated events in G1 / G2/M transition of mitotic cell cycle / positive regulation of fibroblast proliferation / 細胞老化 / Regulation of TP53 Degradation / 核膜 / Factors involved in megakaryocyte development and platelet production / Processing of DNA double-strand break ends / cellular response to hypoxia / Senescence-Associated Secretory Phenotype (SASP) / 遺伝子発現の調節 / peptidyl-serine phosphorylation / Ras protein signal transduction / Regulation of TP53 Activity through Phosphorylation / transcription regulator complex / DNA複製 / chromosome, telomeric region / Ub-specific processing proteases / エンドソーム / クロマチンリモデリング / 細胞分裂 / protein domain specific binding / protein phosphorylation / DNA修復 / protein serine kinase activity / 中心体 / protein serine/threonine kinase activity / DNA-templated transcription / positive regulation of cell population proliferation / protein kinase binding / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / magnesium ion binding 類似検索 - 分子機能 | ||||||
生物種 | Homo sapiens (ヒト) | ||||||
手法 | X線回折 / シンクロトロン / 解像度: 2.3 Å | ||||||
データ登録者 | Jeffrey, P.D. / Russo, A.A. / Pavletich, N.P. | ||||||
引用 | ジャーナル: Nature / 年: 1995 タイトル: Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex. 著者: Jeffrey, P.D. / Russo, A.A. / Polyak, K. / Gibbs, E. / Hurwitz, J. / Massague, J. / Pavletich, N.P. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 1fin.cif.gz | 239.3 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb1fin.ent.gz | 192.8 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 1fin.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/fi/1fin ftp://data.pdbj.org/pub/pdb/validation_reports/fi/1fin | HTTPS FTP |
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-関連構造データ
類似構造データ |
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-リンク
-集合体
登録構造単位 |
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1 |
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2 |
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単位格子 |
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-要素
#1: タンパク質 | 分子量: 33976.488 Da / 分子数: 2 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 細胞株: SF9 / プラスミド: PET3A 発現宿主: Spodoptera frugiperda (ツマジロクサヨトウ) 株 (発現宿主): SF9 参照: UniProt: P24941, 転移酵素; リンを含む基を移すもの; キナーゼ(アルコールにつなげるもの) #2: タンパク質 | 分子量: 29867.512 Da / 分子数: 2 / Fragment: RESIDUES 173 - 432 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) 解説: THE FRAGMENT USED IN THE CRYSTALLIZATION WAS PRODUCED BY THE CLEAVAGE OF FULL-LENGTH CYCLIN A BY SUBTILISIN 細胞株: SF9 / プラスミド: PET3A / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): SF9 / 参照: UniProt: P20248 #3: 化合物 | #4: 水 | ChemComp-HOH / | |
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-実験情報
-実験
実験 | 手法: X線回折 |
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-試料調製
結晶 | マシュー密度: 4.16 Å3/Da / 溶媒含有率: 70 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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結晶化 | *PLUS 温度: 4 ℃ / pH: 7 / 手法: 蒸気拡散法, ハンギングドロップ法 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
溶液の組成 | *PLUS
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-データ収集
放射光源 | 由来: シンクロトロン / サイト: CHESS / ビームライン: A1 / 波長: 0.92 |
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検出器 | 検出器: CCD / 日付: 1995年2月10日 |
放射 | 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 0.92 Å / 相対比: 1 |
反射 | Num. obs: 86466 / % possible obs: 90.2 % / 冗長度: 7.8 % / Rmerge(I) obs: 0.061 |
反射 | *PLUS 最高解像度: 2.3 Å / Num. measured all: 677413 |
-解析
ソフトウェア |
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精密化 | 解像度: 2.3→6 Å / σ(F): 2 /
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精密化ステップ | サイクル: LAST / 解像度: 2.3→6 Å
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拘束条件 |
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ソフトウェア | *PLUS 名称: TNT / 分類: refinement | ||||||||||||||||||||||||||||||
精密化 | *PLUS Rfactor obs: 0.208 | ||||||||||||||||||||||||||||||
溶媒の処理 | *PLUS | ||||||||||||||||||||||||||||||
原子変位パラメータ | *PLUS |