National Institutes of Health/National Institute of General Medical Sciences
GM080139
United States
Citation
Journal: Nat Methods / Year: 2019 Title: A complete data processing workflow for cryo-ET and subtomogram averaging. Authors: Muyuan Chen / James M Bell / Xiaodong Shi / Stella Y Sun / Zhao Wang / Steven J Ludtke / Abstract: Electron cryotomography is currently the only method capable of visualizing cells in three dimensions at nanometer resolutions. While modern instruments produce massive amounts of tomography data ...Electron cryotomography is currently the only method capable of visualizing cells in three dimensions at nanometer resolutions. While modern instruments produce massive amounts of tomography data containing extremely rich structural information, data processing is very labor intensive and the results are often limited by the skills of the personnel rather than the data. We present an integrated workflow that covers the entire tomography data processing pipeline, from automated tilt series alignment to subnanometer resolution subtomogram averaging. Resolution enhancement is made possible through the use of per-particle per-tilt contrast transfer function correction and alignment. The workflow greatly reduces human bias, increases throughput and more closely approaches data-limited resolution for subtomogram averaging in both purified macromolecules and cells.
History
Deposition
Feb 7, 2019
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Header (metadata) release
Mar 6, 2019
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Map release
Oct 30, 2019
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Update
Nov 27, 2019
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Current status
Nov 27, 2019
Processing site: RCSB / Status: Released
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