Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Structural snapshots capture nucleotide release at the mu-opioid receptor
Journal, issue, pages	Nature, Year 2025
Publish date	Aug 6, 2025 (structure data deposition date)
Authors	Khan S / Tyson AS / Ranjbar M / Zhang Z / Singh J / Han GW / Gati C
External links	Nature / Search PubMed
Methods	EM (single particle)
Resolution	2.73 - 8.78 Å
Structure data	EMDB-71976: Inactive-state naloxone-mu opioid receptor nanobody6 complex - Consensus map Method: EM (single particle) / Resolution: 3.58 Å EMDB-71977: Inactive-state naloxone-mu opioid receptor nanobody6 complex - Locally refined receptor map Method: EM (single particle) / Resolution: 3.4 Å EMDB-71978: Inactive-state naloxone-mu opioid receptor nanobody6 complex - Locally refined fiducal map Method: EM (single particle) / Resolution: 3.12 Å EMDB-71979: Nucleotide-free naloxone-mu opioid receptor Gi1 complex - Consensus map Method: EM (single particle) / Resolution: 3.1 Å EMDB-71980: Nucleotide-free naloxone-mu opioid receptor Gi1 complex - Locally refined receptor map Method: EM (single particle) / Resolution: 3.3 Å EMDB-71981: Nucleotide-free naloxone-mu opioid receptor Gi1 complex - Locally refined Gi map Method: EM (single particle) / Resolution: 3.1 Å EMDB-71982: Latent-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Consensus map Method: EM (single particle) / Resolution: 3.82 Å EMDB-71983: Latent-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined receptor map Method: EM (single particle) / Resolution: 3.97 Å EMDB-71984: Latent-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined Gi map Method: EM (single particle) / Resolution: 3.15 Å EMDB-71985: Unlatched-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Consensus map Method: EM (single particle) / Resolution: 3.2 Å EMDB-71986: Unlatched-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined receptor map Method: EM (single particle) / Resolution: 3.2 Å EMDB-71987: Unlatched-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined Gi map Method: EM (single particle) / Resolution: 3.0 Å EMDB-71988: Primed-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Consensus map Method: EM (single particle) / Resolution: 3.01 Å EMDB-71989: Primed-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined receptor map Method: EM (single particle) / Resolution: 3.05 Å EMDB-71990: Primed-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined Gi map Method: EM (single particle) / Resolution: 2.91 Å EMDB-71991: Engaged-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) - Consensus map Method: EM (single particle) / Resolution: 3.17 Å EMDB-71992: Engaged-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined receptor map Method: EM (single particle) / Resolution: 3.35 Å EMDB-71993: Engaged-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined Gi map Method: EM (single particle) / Resolution: 2.98 Å EMDB-71998: Primed-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) - Consensus map Method: EM (single particle) / Resolution: 2.86 Å EMDB-71999: Primed-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined receptor map Method: EM (single particle) / Resolution: 3.01 Å EMDB-72000: Primed-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) - Locally refined Gi GDP map Method: EM (single particle) / Resolution: 2.73 Å 72001 9pxu EMDB-72001, PDB-9pxu: Inactive-state naloxone-mu opioid receptor nanobody6 complex Method: EM (single particle) / Resolution: 3.4 Å 72002 9pxv EMDB-72002, PDB-9pxv: Nucleotide-free naloxone-mu opioid receptor Gi1 complex Method: EM (single particle) / Resolution: 3.02 Å 72003 9pxw EMDB-72003, PDB-9pxw: Latent-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) Method: EM (single particle) / Resolution: 3.8 Å 72004 9pxx EMDB-72004, PDB-9pxx: Unlatched-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) Method: EM (single particle) / Resolution: 3.1 Å 72005 9pxy EMDB-72005, PDB-9pxy: Primed-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound) Method: EM (single particle) / Resolution: 3.0 Å 72006 9py2 EMDB-72006, PDB-9py2: Engaged-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) Method: EM (single particle) / Resolution: 3.16 Å 72008 9py4 EMDB-72008, PDB-9py4: Primed-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) Method: EM (single particle) / Resolution: 2.78 Å EMDB-72022: Latent-state loperamide-mu opioid receptor-Gi GDP complex (constant GDP) - Consensus map Method: EM (single particle) / Resolution: 8.78 Å EMDB-72023: Latent-state loperamide-mu opioid receptor-Gi GDP complex (constant GDP) - Locally refined map Method: EM (single particle) / Resolution: 8.27 Å EMDB-72024: Engaged-state loperamide-mu opioid receptor-Gi GDP complex (constant GDP) - Consensus map Method: EM (single particle) / Resolution: 6.4 Å EMDB-72025: Engaged-state loperamide-mu opioid receptor-Gi GDP complex (constant GDP) - Locally refined map Method: EM (single particle) / Resolution: 4.44 Å EMDB-72026: Open-AHD loperamide-mu opioid receptor-Gi GDP complex (constant GDP) - Consensus map Method: EM (single particle) / Resolution: 4.24 Å EMDB-72027: Open-AHD loperamide-mu opioid receptor-Gi GDP complex (constant GDP) - Locally refined receptor map Method: EM (single particle) / Resolution: 4.16 Å
Chemicals	PDB-1apv: CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES ChemComp-NA: Unknown entry ChemComp-CLR: CHOLESTEROL ChemComp-VSN: 5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]guanosine PDB-1cmv: HUMAN CYTOMEGALOVIRUS PROTEASE
Source	homo sapiens (human) synthetic construct (others) escherichia coli (E. coli)
Keywords	MEMBRANE PROTEIN / G protein coupled receptor / Mu Opioid receptor / Naloxone / GDP / Loperamide