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TitleBacteroides eggerthii heparin lyase I liberates the rare delta-GlcA(alpha1->4)Glc3,6,N-sulphated disaccharide motif contained within the pentasaccharide of the clinical anticoagulant fondaparinux sodium
Journal, issue, pagesTo Be Published
Publish dateSep 12, 2024 (structure data deposition date)
AuthorsKandola, T.K. / Mycroft-West, C. / Andrade De Lima, M.L. / Turner, A. / Gardini, C. / Urso, E. / Miller, G.J. / Bisio, A. / Yates, E.A. / Guerrini, M. ...Kandola, T.K. / Mycroft-West, C. / Andrade De Lima, M.L. / Turner, A. / Gardini, C. / Urso, E. / Miller, G.J. / Bisio, A. / Yates, E.A. / Guerrini, M. / Wu, L. / Skidmore, M.A.
External linksSearch PubMed
MethodsX-ray diffraction
Resolution1.715 - 1.85 Å
Structure data

PDB-9grw:
Structure of Heparinase I from Bacteroides eggerthii in complex with calcium cofactor
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-9gv9:
Structure of Heparinase I from Bacteroides eggerthii in complex with calcium cofactor and delta-UA(1-4)Glc 3, 6, N-Sulphated disaccharide
Method: X-RAY DIFFRACTION / Resolution: 1.715 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-ACT:
ACETATE ION

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

Source
  • bacteroides eggerthii (bacteria)
KeywordsLYASE / Heparin / Heparan Sulphate / Heparinase / Heparitinase

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