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Structure paper

TitleMechanisms of SAM-AMP synthesis and degradation in antiviral type III CRISPR signaling.
Journal, issue, pagesTo Be Published
Publish dateJan 27, 2025 (structure data deposition date)
AuthorsBenzhen D / Jin X / Chen Z / Zhao B
External linksSearch PubMed
MethodsEM (single particle) / X-ray diffraction
Resolution1.28 - 2.97 Å
Structure data

63293

9lq5

EMDB-63293, PDB-9lq5:
Cryo-EM structure of Apo type III-B CRISPR-Cas effector complex
Method: EM (single particle) / Resolution: 2.97 Å

63294

9lq6

EMDB-63294, PDB-9lq6:
Cryo-EM structure of adTR-bound type III-B CRISPR-Cas effector complex
Method: EM (single particle) / Resolution: 2.94 Å

63295

9lq7

EMDB-63295, PDB-9lq7:
Cryo-EM structure of NTR-bound type III-B CRISPR-Cas effector complex
Method: EM (single particle) / Resolution: 2.81 Å

63296

9lq8

EMDB-63296, PDB-9lq8:
Cryo-EM structure of CTR-bound type III-B CRISPR-Cas effector complex
Method: EM (single particle) / Resolution: 2.85 Å

PDB-9lq9:
Crysral structure of NrN
Method: X-RAY DIFFRACTION / Resolution: 2.38 Å

PDB-9lqa:
Crystal structure of NrN E21A in complex with SAM-AMP
Method: X-RAY DIFFRACTION / Resolution: 1.91 Å

PDB-9lqb:
Crystal structure of NrN E21A in complex with SAH-AMP
Method: X-RAY DIFFRACTION / Resolution: 1.93 Å

PDB-9lqc:
Crystal structure of NrN D119A in complex with SAH-AMP
Method: X-RAY DIFFRACTION / Resolution: 2.37 Å

PDB-9lqd:
Crystal structure of SAM lyase
Method: X-RAY DIFFRACTION / Resolution: 2.16 Å

PDB-9lqe:
Crystal structure of SAM lyase in complex with SAH
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-9lqf:
Crystal structure of SAM lyase in complex with SAH-AMP
Method: X-RAY DIFFRACTION / Resolution: 1.59 Å

PDB-9lqg:
Crystal structure of SAM lyase in complex with MTA-AMP
Method: X-RAY DIFFRACTION / Resolution: 1.28 Å

PDB-9lqh:
Crystal structure of SAM lyase in complex with sinefungin-AMP
Method: X-RAY DIFFRACTION / Resolution: 1.47 Å

Chemicals

ChemComp-MN:
Unknown entry

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-SAM:
S-ADENOSYLMETHIONINE

ChemComp-HOH:
WATER

PDB-1el3:
HUMAN ALDOSE REDUCTASE COMPLEXED WITH IDD384 INHIBITOR

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

PDB-1el0:
SOLUTION STRUCTURE OF THE HUMAN CC CHEMOKINE, I-309

ChemComp-MLT:
D-MALATE

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-GOL:
GLYCEROL

PDB-1ijb:
The von Willebrand Factor mutant (I546V) A1 domain

PDB-1el1:
X-RAY CRYSTAL STRUCTURE ANALYSIS OF CANINE MILK LYSOZYME (HOLO-TYPE)

Source
  • bacteroides fragilis (bacteria)
  • clostridium botulinum (strain hall / atcc 3502 / nctc 13319 / type a) (bacteria)
KeywordsIMMUNE SYSTEM/RNA / CRISPR-Cas complex / adaptive immunity / RNA degradation / second messenger / IMMUNE SYSTEM-RNA complex / IMMUNE SYSTEM / enzyme / phosphodiesterase / CRISPR-Cas system / SAM

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