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TitleCryo-EM Structure of the Human Ribonuclease P Holoenzyme.
Journal, issue, pagesCell, Vol. 175, Issue 5, Page 1393-1404.e11, Year 2018
Publish dateNov 15, 2018
AuthorsJian Wu / Shuangshuang Niu / Ming Tan / Chenhui Huang / Mingyue Li / Yang Song / Qianmin Wang / Juan Chen / Shaohua Shi / Pengfei Lan / Ming Lei /
PubMed AbstractRibonuclease (RNase) P is a ubiquitous ribozyme that cleaves the 5' leader from precursor tRNAs. Here, we report cryo-electron microscopy structures of the human nuclear RNase P alone and in ...Ribonuclease (RNase) P is a ubiquitous ribozyme that cleaves the 5' leader from precursor tRNAs. Here, we report cryo-electron microscopy structures of the human nuclear RNase P alone and in complex with tRNA. Human RNase P is a large ribonucleoprotein complex that contains 10 protein components and one catalytic RNA. The protein components form an interlocked clamp that stabilizes the RNA in a conformation optimal for substrate binding. Human RNase P recognizes the tRNA using a double-anchor mechanism through both protein-RNA and RNA-RNA interactions. Structural comparison of the apo and tRNA-bound human RNase P reveals that binding of tRNA induces a local conformational change in the catalytic center, transforming the ribozyme into an active state. Our results also provide an evolutionary model depicting how auxiliary RNA elements in bacterial RNase P, essential for substrate binding, and catalysis, were replaced by the much more complex and multifunctional protein components in higher organisms.
External linksCell / PubMed:30454648
MethodsEM (single particle) / X-ray diffraction
Resolution2.6 - 3.92 Å
Structure data

EMDB-9626, PDB-6ahr:
Cryo-EM structure of human Ribonuclease P
Method: EM (single particle) / Resolution: 3.92 Å

EMDB-9627, PDB-6ahu:
Cryo-EM structure of human Ribonuclease P with mature tRNA
Method: EM (single particle) / Resolution: 3.66 Å

PDB-6ahv:
Crystal structure of human RPP40
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER / Water

Source
  • homo sapiens (human)
KeywordsHYDROLASE/RNA / Ribonuclease P / RNA-protein complex / HYDROLASE-RNA complex / HYDROLASE / RNase P

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