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Structure paper

TitleStructural basis for the initiation of eukaryotic transcription-coupled DNA repair.
Journal, issue, pagesNature, Vol. 551, Issue 7682, Page 653-657, Year 2017
Publish dateNov 30, 2017
AuthorsJun Xu / Indrajit Lahiri / Wei Wang / Adam Wier / Michael A Cianfrocco / Jenny Chong / Alissa A Hare / Peter B Dervan / Frank DiMaio / Andres E Leschziner / Dong Wang
External linksPubMed:29168508 / Publisher's page
KeywordsAdenosine Triphosphatases / Cryoelectron Microscopy / DNA / DNA Repair / Protein Domains / RAD26 protein, S cerevisiae / RNA Polymerase II / SNF2 protein, S cerevisiae / Saccharomyces cerevisiae / Saccharomyces cerevisiae Proteins / Transcription Elongation, Genetic / Transcription Factors / Transcription, Genetic / TRANSCRIPTION/RNA/DNA / complex / RNA polymerase / CSB / transcription / TRANSCRIPTION-RNA-DNA complex
MethodsEM (single particle)
Resolution4.5 - 10 A
Structure data

EMDB-8735:
Ternary complex of RNA Pol II, transcription scaffold and Rad26

EMDB-8736:
Structural Basis forEukaryotic Transcription-Coupled Repair Initiation

EMDB-8737:
RNA pol II elongation complex

EMDB-8885:
RNA Pol II complex arrested by a CPD lesion

EMDB-7038:
RNA Pol II elongation complex bound to Rad26

PDB-5vvr:
Ternary complex of RNA Pol II, transcription scaffold and Rad26

PDB-5vvs:
RNA pol II elongation complex

Chemicals

ChemComp-ZN:
ZINC IONZinc

ChemComp-MG:
MAGNESIUM IONMagnesium

Source
  • Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
  • saccharomyces cerevisiae (strain atcc 204508 / s288c) (yeast)
  • saccharomyces cerevisiae (baker's yeast)

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Major update of PDB

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    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    EMN Papers

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