[English] 日本語
EMN Papers
- Database of articles cited by 3DEM data entries -

+
Search query

Keywords
Author
Journal
IF

-
Structure paper

TitleStructure and assembly of the Ebola virus nucleocapsid.
Journal, issue, pagesNature, Vol. 551, Issue 7680, Page 394-397, Year 2017
Publish dateNov 16, 2017
AuthorsWilliam Wan / Larissa Kolesnikova / Mairi Clarke / Alexander Koehler / Takeshi Noda / Stephan Becker / John A G Briggs
External linksPubMed:29144446 / Publisher's page
MethodsEM (subtomogram averaging) / EM (tomography)
Resolution6.6 - 9.1 A
Structure data

EMDB-3869:
The structure of Ebola virus nucleoprotein (residues 1-450) in nucleocapsid-like assemblies

EMDB-3871:
The structure of Ebola virus nucleocapsid-like assemblies from recombinant virus-like particles (nucleoprotein, VP24,VP35,VP40)

PDB-6ehl:
Model of the Ebola virus nucleoprotein in recombinant nucleocapsid-like assemblies

PDB-6ehm:
Model of the Ebola virus nucleocapsid subunit from recombinant virus-like particles

EMDB-3870:
Cryo-electron tomogram of Ebola virus nucleoprotein, residues 1-450

EMDB-3872:
Cryo-electron tomogram of Ebola virus virus-like particles

EMDB-3873:
The structure of Ebola virus nucleocapsid from virions

EMDB-3874:
Cryo-electron tomogram of Ebola virus

EMDB-3875:
The structure of Marburg virus nucleocapsid from virions

EMDB-3876:
Cryo-electron tomogram of Marburg virus

SourceEbola virus - Mayinga, Zaire, 1976 / virus
zaire ebolavirus (strain mayinga-76) / virus
Lake Victoria marburgvirus - Popp / virus
Marburg virus - Musoke, Kenya, 1980 / virus
Marburg virus - Angola / virus
KeywordsVIRUS LIKE PARTICLE / nucleocapsid / virus-like particle

+
About EMN Papers

-
News

-
Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

+
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

Read more

-
EMN Papers

Database of articles cited by 3DEM data entries

  • Database of articles cited by 3DEM data entries in EMDB and PDB
  • Using PubMed data

Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

Read more