[English] 日本語
EMN Papers
- Database of articles cited by 3DEM data entries -

+
Search query

Keywords
Author
Journal
IF

-
Structure paper

TitleLis1 Has Two Opposing Modes of Regulating Cytoplasmic Dynein.
Journal, issue, pagesCell, Vol. 170, Issue 6, Page 1197-1208.e12, Year 2017
Publish dateSep 7, 2017
AuthorsMorgan E DeSantis / Michael A Cianfrocco / Zaw Min Htet / Phuoc Tien Tran / Samara L Reck-Peterson / Andres E Leschziner
External linksPubMed:28886386 / Publisher's page
MethodsEM (single particle)
Resolution7.7 - 10.5 A
Structure data

EMDB-8673:
Cryo-EM structure of yeast cytoplasmic dynein-1 with Lis1 and ATP

EMDB-8706:
Cryo-EM structure of yeast cytoplasmic dynein with Walker B mutation at AAA3 in presence of ATP-VO4

PDB-5vh9:
Cryo-EM structure of yeast cytoplasmic dynein-1 with Lis1 and ATP

PDB-5vlj:
Cryo-EM structure of yeast cytoplasmic dynein with Walker B mutation at AAA3 in presence of ATP-VO4

SourceSaccharomyces cerevisiae / yeast / サッカロミセス・セレビシエ /
Keywords1-Alkyl-2-acetylglycerophosphocholine Esterase / Adenosine Triphosphate / Amino Acid Sequence / Cryoelectron Microscopy / Dyneins / Humans / KIP2 protein, S cerevisiae / Microtubule-Associated Proteins / Models, Molecular / Molecular Motor Proteins / PAFAH1B1 protein, S cerevisiae / PAFAH1B1 protein, human / Protein Domains / Saccharomyces cerevisiae / Saccharomyces cerevisiae Proteins / Sequence Alignment / MOTOR PROTEIN / cytoplasmic dynein / lis1

+
About EMN Papers

-
News

-
Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

    -
    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

    +
    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

    +
    Jun 16, 2017. Omokage search with filter

    Omokage search with filter

    • Result of Omokage search can be filtered by keywords and the database types

    Related info.: Omokage search

    +
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    Read more

    -
    EMN Papers

    Database of articles cited by 3DEM data entries

    • Database of articles cited by 3DEM data entries in EMDB and PDB
    • Using PubMed data

    Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

    Read more