[English] 日本語
EMN Papers
- Database of articles cited by 3DEM data entries -

+
Search query

Keywords
Author
Journal
IF

-
Structure paper

TitleStructures of the CRISPR genome integration complex.
Journal, issue, pagesScience, Year 2017
Publish dateJul 20, 2017
AuthorsAddison V Wright / Jun-Jie Liu / Gavin J Knott / Kevin W Doxzen / Eva Nogales / Jennifer A Doudna
External linksPubMed:28729350 / Publisher's page
MethodsEM (single particle) / X-ray diffraction
Resolution2.9 - 3.89 A
Structure data

EMDB-8827:
Cas1-Cas2-IHF-DNA holo-complex

PDB-5vvj:
Cas1-Cas2 bound to half-site intermediate

PDB-5vvk:
Cas1-Cas2 bound to full-site mimic

PDB-5vvl:
Cas1-Cas2 bound to full-site mimic with Ni

PDB-5wfe:
Cas1-Cas2-IHF-DNA holo-complex

Chemicals

ChemComp-NI:
NICKEL (II) ION

SourceEscherichia coli / bacteria / エシェリキア・コリ, 大腸菌 /
Escherichia coli (strain k12) / bacteria /
Synthetic construct
Escherichia coli k-12 / bacteria / image: Escherichia coli
Escherichia coli s88 / bacteria / image: Escherichia coli
KeywordsHYDROLASE/DNA / Complex / DNA / HYDROLASE-DNA complex / DNA BINDING PROTEIN/DNA / CRISPR integration complex / Cas1-Cas2 / IHF / DNA BINDING PROTEIN / DNA BINDING PROTEIN-DNA complex

+
About EMN Papers

-
News

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

-
EMN Papers

Database of articles cited by 3DEM data entries

  • Database of articles cited by 3DEM data entries in EMDB and PDB
  • Using PubMed data

Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

Read more