[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,735 items (all data)

EMDB-3624:
Hibernating ribosome from Staphylococcus aureus (Unrotated state)
Method: single particle / : Khusainov I, Vicens Q

EMDB-3625:
Hibernating ribosome from Staphylococcus aureus (Rotated state)
Method: single particle / : Khusainov I, Vicens Q

EMDB-3638:
100S disome from Staphylococcus aureus (Tight conformation)
Method: single particle / : Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

EMDB-3639:
100S disome from Staphylococcus aureus (Loose conformation)
Method: single particle / : Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

EMDB-3695:
Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex
Method: single particle / : Glyde R

EMDB-3696:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Glyde R

EMDB-3697:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Glyde R, Ye FZ, Darbari VC, Zhang N, Buck M, Zhang XD

EMDB-3698:
Motor domains from human cytoplasmic dynein-1 in the phi-particle conformation
Method: single particle / : Zhang K, Foster H

EMDB-3703:
Human cytoplasmic dynein-1 tail in the twisted N-terminus state
Method: single particle / : Zhang K

EMDB-3704:
Human cytoplasmic dynein-1 tail in the parallel state
Method: single particle / : Zhang K, Foster HE, Carter AP

EMDB-3707:
Locally refined human cytoplasmic dynein-1 tail bound to dynactin and an N-terminal construct of BICD2
Method: single particle / : Zhang K, Foster HE, Carter AP

EMDB-3714:
Asymmetric RNA feature in T=4 HBV virus-like particle.
Method: single particle / : Patel N, White SJ, Thompson RF, Bingham R, Weiss EU, Maskell DP, Zlotnick A, Dykeman E, Tuma R, Twarock R, Ranson NA, Stockley PG

EMDB-3715:
T=4 HBV virus-like particle.
Method: icosahedral / : Patel N, White SJ, Thompson RF, Bingham R, Weiss EU, Maskell DP, Zlotnick A, Dykeman E, Tuma R, Twarock R, Ranson NA, Stockley PG

EMDB-3716:
T=3 HBV virus-like particle.
Method: icosahedral / : Patel N, White SJ, Thompson RF, Bingham R, Weiss EU, Maskell DP, Zlotnick A, Dykeman E, Tuma R, Twarock R, Ranson NA, Stockley PG

EMDB-3720:
The structure of the COPI coat leaf
Method: subtomogram averaging / : Dodonova SO, Aderhold P

EMDB-3721:
The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor
Method: subtomogram averaging / : Dodonova SO, Aderhold P

EMDB-3722:
The structure of the COPI coat linkage I
Method: subtomogram averaging / : Dodonova SO, Aderhold P

EMDB-3723:
The structure of the COPI coat linkage II
Method: subtomogram averaging / : Dodonova SO, Aderhold P

EMDB-3724:
The structure of the COPI coat linkage IV
Method: subtomogram averaging / : Dodonova SO, Aderhold P

EMDB-3725:
Negative-stain EM structure of the A. tumefaciens outer-membrane core complex
Method: single particle / : Costa TRD, Orlova EV, Waksman G

EMDB-4004:
Tail sheath and tail tube of native bacteriophage phi812K1-420
Method: helical / : Novacek J, Siborova M, Benesik M, Pantucek R, Doskar J, Plevka P

EMDB-4005:
Tail sheath of bacteriophage phi812K1-420 after contraction
Method: helical / : Novacek J, Siborova M, Benesik M, Pantucek R, Doskar J, Plevka P

EMDB-8660:
Spacer capture and integration by a type I-F Cas1:Cas2-3 CRISPR adaptation complex
Method: single particle / : Fagerlund RD, Wilkinson ME, Bostina M, Fineran PC

EMDB-8702:
Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc
Method: single particle / : Jin P

EMDB-8703:
A 3.9 Angstrom resolution density map of the human cytomegalovirus (HCMV) capsid and its securing layer of pp150 tegument protein
Method: icosahedral / : Yu X, Jih J

EMDB-8726:
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3)
Method: single particle / : Zhao J

PDB-5nd8:
Hibernating ribosome from Staphylococcus aureus (Unrotated state)
Method: single particle / : Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

PDB-5nd9:
Hibernating ribosome from Staphylococcus aureus (Rotated state)
Method: single particle / : Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

PDB-5nsr:
Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex
Method: single particle / : Glyde R, Ye FZ, Darbari VC, Zhang N, Buck M, Zhang XD

PDB-5nss:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Glyde R, Ye FZ, Darbari VC, Zhang N, Buck M, Zhang XD

PDB-5nug:
Motor domains from human cytoplasmic dynein-1 in the phi-particle conformation
Method: single particle / : Zhang K, Foster HE, Carter AP

PDB-5nvs:
Human cytoplasmic dynein-1 tail in the twisted N-terminus state
Method: single particle / : Zhang K, Foster HE, Carter AP

PDB-5nzr:
The structure of the COPI coat leaf
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzs:
The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzt:
The structure of the COPI coat linkage I
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzu:
The structure of the COPI coat linkage II
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzv:
The structure of the COPI coat linkage IV
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5vkq:
Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc
Method: single particle / : Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Chen T, Jan LY, Jan YN, Cheng Y

PDB-5vku:
An atomic structure of the human cytomegalovirus (HCMV) capsid with its securing layer of pp150 tegument protein
Method: single particle / : Yu X, Jih J, Jiang J, Zhou H

PDB-5voz:
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3)
Method: single particle / : Zhao J

EMDB-3491:
Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana
Method: single particle / : van Bezouwen LS, Caffarri S

EMDB-3588:
Cryo-EM map of the tetanus neurotoxin
Method: single particle / : Conrad J, Masuyer G, Stenmark P

EMDB-3630:
CryoEM Structure of Foot and Mouth Disease Virus O PanAsia
Method: icosahedral / : Kotecha A, Stuart D

EMDB-3631:
CryoEM Structure of Foot and Mouth Disease Virus O1 Manisa
Method: single particle / : Kotecha A, Stuart D

EMDB-3632:
Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A
Method: single particle / : Kotecha A, Stuart D

EMDB-3633:
Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A prime
Method: single particle / : Kotecha A, Stuart D

EMDB-3634:
Localised Reconstruction of Integrin alpha v beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose A
Method: single particle / : Kotecha A, Stuart D

EMDB-3635:
Localised Reconstruction of Integrin alpha v beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose B
Method: single particle / : Kotecha A, Stuart D

EMDB-8514:
3D reconstruction of the CaMKIIa holoenzyme.
Method: single particle / : Myers J, Reichow SL

EMDB-8693:
BG505 SOSIP.664 in complex with broadly neutralizing antibodies BG1 and 8ANC195
Method: single particle / : Wang H, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more