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Showing 1 - 50 of 5,462 items for database: EMDB

EMDB-3781:
TET12SN density map (Design of in vivo self-assembling coiled-coil protein origami)

EMDB-3784:
Structure of the membrane-bound human mitoribosome

EMDB-3788:
PYR16SN density map (Design of in vivo self-assembling coiled-coil protein origami)

EMDB-3789:
TRIP18SN density map (Design of in vivo self-assembling coiled-coil protein origami)

EMDB-3814:
TORC1 Organised in Inhibited Domains (TOROIDs) regulate TORC1 activity

EMDB-3848:
Single particle cryo-STEM of ferritin with 48 Zn atoms

EMDB-3849:
Single particle cryo-STEM of ferritin with Fe at low stoichiometry

EMDB-7014:
Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

EMDB-7015:
Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

EMDB-7016:
Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

EMDB-7030:
Staphylococcus aureus phage 80alpha procapsid

EMDB-7035:
Staphylococcus aureus pathogenicity island 1 80alpha-derived procapsid

EMDB-7048:
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound target dsDNA

EMDB-7049:
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex

EMDB-7050:
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF1

EMDB-7051:
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF2

EMDB-7052:
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF10

EMDB-8704:
Negative stain electron microscopy map of human CD22 extracellular domain

EMDB-8705:
Negative stain electron microscopy map of human CD22 extracellular domain in complex with epratuzumab Fab

EMDB-8708:
Phage Qbeta with icosahedral symmetry

EMDB-8709:
Phage Qbeta with C1 symmetry

EMDB-8710:
A2 with sequestered coat dimer protein and interacting RNAs

EMDB-8711:
Phage Qbeta in complex with MurA

EMDB-8840:
cryo-EM of a lysosomal protein

EMDB-8841:
cryo-EM of a lysosomal protein

EMDB-8881:
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs in closed I conformation at 3.64 Angstrom resolution

EMDB-8882:
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs in closed II conformation at 3.75 Angstrom resolution

EMDB-8883:
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs at 3.59 Angstrom resolution

EMDB-3303:
Cryo-EM reconstruction of Seneca VAlley Virus - receptor complex

EMDB-3581:
Structure of 70S ribosome from Lactococcus lactis

EMDB-3765:
Structure of nucleosome-Chd1 complex

EMDB-3847:
Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

EMDB-7029:
CryoEM map from poorly ordered myosin thick filaments isolated from asynchronous flight muscle of the large waterbug Lethocerus indicus

EMDB-8764:
Cryo-electron microscopy structure of a TRPML3 ion channel

EMDB-8833:
Mutated BRCA1-BARD1

EMDB-8834:
Wild type BRCA1-BARD1

EMDB-9401:
CH505 SOSIP.664 trimer in complex with DH522.2 Fab

EMDB-3444:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins

EMDB-3620:
Microtubule-bound MKLP2 motor domain in the presence of ADP

EMDB-3621:
Microtubule-bound MKLP2 motor domain in the with no nucleotide

EMDB-3622:
Microtubule-bound MKLP2 motor domain in the presence of ADP.AlFx

EMDB-3623:
Microtubule-bound MKLP2 motor domain in the presence of AMPPNP

EMDB-3637:
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

EMDB-3640:
2.9S structure of the 70S ribosome composing the S. aureus 100S complex

EMDB-4154:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins

EMDB-4156:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins

EMDB-6793:
Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree

EMDB-6794:
Cryo-EM structure of zika virus complexed with Fab of a human monoclonal antibody named ZKA190 at 4 degrees celsius

EMDB-7040:
Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion

EMDB-8816:
TFIIH reconstruction from particles sorted for density near the XPD ARCH domain using signal-subtracted classification.

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

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Related info.: Omokage search

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

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