[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 76 items for author: y. & zhang

PDB-5xjc:
Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
Method: single particle / : Zhang X, Yan C, Hang J, Finci IL, Lei J, Shi Y

PDB-5vkq:
Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc
Method: single particle / : Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Chen T, Jan LY, Jan YN, Cheng Y

PDB-5vai:
Cryo-EM structure of the activated Glucagon-like peptide-1 receptor in complex with G protein
Method: single particle / : Zhang Y, Sun B, Feng D, Hu H, Chu M, Qu Q, Tarrasch JT, Li S, Kobilka TS, Kobilka BK, Skiniotis G

PDB-5uz7:
Volta phase plate cryo-electron microscopy structure of a calcitonin receptor-heterotrimeric Gs protein complex
Method: single particle / : Liang YL, Khoshouei M, Radjainia M, Zhang Y, Glukhova A, Tarrasch J, Thal DM, Furness SGB, Christopoulos G, Coudrat T, Danev R, Baumeister W, Miller LJ, Christopoulos A, Kobilka BK, Wootten D, Skiniotis G, Sexton PM

PDB-5x58:
Prefusion structure of SARS-CoV spike glycoprotein, conformation 1
Method: single particle / : Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF

PDB-5x59:
Prefusion structure of MERS-CoV spike glycoprotein, three-fold symmetry
Method: single particle / : Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF

PDB-5x5b:
Prefusion structure of SARS-CoV spike glycoprotein, conformation 2
Method: single particle / : Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF

PDB-5x5c:
Prefusion structure of MERS-CoV spike glycoprotein, conformation 1
Method: single particle / : Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF

PDB-5x5f:
Prefusion structure of MERS-CoV spike glycoprotein, conformation 2
Method: single particle / : Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF

PDB-5wvi:
The resting state of yeast proteasome
Method: single particle / : Ding Z, Cong Y

PDB-5wvk:
Yeast proteasome-ADP-AlFx
Method: single particle / : Ding Z, Cong Y

PDB-5u0p:
Cryo-EM structure of the transcriptional Mediator
Method: single particle / : Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias F

PDB-5u0s:
Cryo-EM structure of the Mediator-RNAPII complex
Method: single particle / : Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias F

PDB-5wte:
Cryo-EM structure for Hepatitis A virus full particle
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5wtf:
Cryo-EM structure for Hepatitis A virus empty particle
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5wth:
Cryo-EM structure for Hepatitis A virus complexed with FAB
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5gzr:
Zika virus E protein complexed with a neutralizing antibody Z23-Fab
Method: single particle / : Gao GG, Shi Y, Peng R, Liu S

PDB-5h37:
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0
Method: single particle / : Zhang S, Kostyuchenko V, Ng TS, Lim XN, Ooi JSG, Lambert S, Tan TY, Widman D, Shi J, Baric RS, Lok SM

PDB-3jbz:
Crystal structure of mTOR docked into EM map of dimeric ATM kinase
Method: single particle / : Lau WCY

PDB-3jbm:
Electron cryo-microscopy of a virus-like particle of orange-spotted grouper nervous necrosis virus
Method: single particle / : Xie J, Li K, Gao Y, Huang R, Lai Y, Shi Y, Yang S, Zhu G, Zhang Q, He J

PDB-5kc2:
Negative stain structure of Vps15/Vps34 complex
Method: single particle / : Kirsten ML, Zhang L, Ohashi Y, Perisic O, Williams RL, Sachse C

PDB-5kps:
Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
Method: single particle / : Loveland AB, Bah E, Madireddy R, Zhang Y, Brilot AF, Grigorieff N, Korostelev AA

PDB-5kpv:
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)
Method: single particle / : Loveland AB, Bah E, Madireddy R, Zhang Y, Brilot AF, Grigorieff N, Korostelev AA

PDB-5kpw:
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
Method: single particle / : Loveland AB, Bah E, Madireddy R, Zhang Y, Brilot AF, Grigorieff N, Korostelev AA

PDB-5kpx:
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
Method: single particle / : Loveland AB, Bah E, Madireddy R, Zhang Y, Brilot AF, Grigorieff N, Korostelev AA

PDB-5gqh:
Cryo-EM structure of PaeCas3-AcrF3 complex
Method: single particle / : Zhang X, Ma J, Wang Y, Wang J

PDB-3jcs:
2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
Method: single particle / : Shalev-Benami M, Zhang Y, Matzov D, Halfon Y, Zackay A, Rozenberg H, Zimmerman E, Bashan A, Jaffe CL, Yonath A, Skiniotis G

PDB-3jb8:
Insight into Three-dimensional structure of Maize Chlorotic Mottle Virus Revealed by Single Particle Analysis
Method: single particle / : Wang CY, Zhang QF, Gao YZ, Zhou XP, Ji G, Huang XJ, Hong J, Zhang CX

PDB-3jct:
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Method: single particle / : Wu S, Kumcuoglu B, Yan KG, Brown H, Zhang YX, Tan D, Gamalinda M, Yuan Y, Li ZF, Jakovljevic J, Ma CY, Lei JL, Dong MQ, Woolford Jr JL, Gao N

PDB-3jcu:
Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
Method: single particle / : Wei XP, Zhang XZ, Su XD, Cao P, Liu XY, Li M, Chang WR, Liu ZF

PDB-5jb1:
Pseudo-atomic structure of Human Papillomavirus Type 59 L1 Virus-like Particle
Method: single particle / : Li ZH, Yan XD, Yu H, Zheng QB, Gu Y, Li SW

PDB-3jau:
The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
Method: single particle / : Fan C, Ye XH, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y

PDB-3jcd:
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y

PDB-3jce:
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y

PDB-3jaa:
HUMAN DNA POLYMERASE ETA in COMPLEX WITH NORMAL DNA AND INCO NUCLEOTIDE (NRM)
Method: single particle / : Lau WCY, Li Y, Zhang Q, Huen MSY

PDB-3ja9:
Structure of native human PCNA
Method: single particle / : Lau WCY, Li Y, Zhang Q, Huen MSY

PDB-3jbl:
Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization
Method: single particle / : Zhang L, Chen S, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H

PDB-5ady:
Cryo-EM structures of the 50S ribosome subunit bound with HflX
Method: single particle / : Zhang Y, Mandava CS, Cao W, Li X, Zhang D, Li N, Zhang Y, Zhang X, Qin Y, Mi K, Lei J, Sanyal S, Gao N

PDB-3ja8:
Cryo-EM structure of the MCM2-7 double hexamer
Method: single particle / : Li N, Zhai Y, Zhang Y, Li W, Yang M, Lei J, Tye BK, Gao N

PDB-3ja7:
Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution
Method: single particle / : Sun L, Zhang X, Gao S, Rao PA, Padilla-Sanchez V, Chen Z, Sun S, Xiang Y, Subramaniam S, Rao VB, Rossmann MG

PDB-3j8h:
Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution
Method: single particle / : Yan Z, Bai X, Yan C, Wu J, Scheres SHW, Shi Y, Yan N

PDB-3j8g:
Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit
Method: single particle / : Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y, Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N

PDB-3j7v:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j7w:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j7x:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-4ckg:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

PDB-4ckh:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

PDB-4v8m:
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Method: single particle / : Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J

PDB-4csu:
Cryo-EM structures of the 50S ribosome subunit bound with ObgE
Method: single particle / : Feng B, Mandava CS, Guo Q, Wang J, Cao W, Li N, Zhang Y, Zhang Y, Wang Z, Wu J, Sanyal S, Lei J, Gao N

PDB-3zif:
Cryo-EM structures of two intermediates provide insight into adenovirus assembly and disassembly
Method: single particle / : Cheng L, Huang X, Li X, Xiong W, Sun W, Yang C, Zhang K, Wang Y, Liu H, Ji G, Sun F, Zheng C, Zhu P

Pages:

+
About EMN search

-
News

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more