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Showing all 32 items for author: w. & xu

PDB-6bgi:
Cryo-EM structure of the TMEM16A calcium-activated chloride channel in nanodisc
Method: single particle / : Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbuhler K, Ye W, Qi J, Chen T, Craik CS, Jan YN, Minor Jr DL, Cheng Y, Jan LY

PDB-6bgj:
Cryo-EM structure of the TMEM16A calcium-activated chloride channel in LMNG
Method: single particle / : Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbuhler K, Ye W, Qi L, Chen T, Craik CS, Jan YN, Minor DLJr, Cheng Y, Jan LY

PDB-5xs4:
Structure of Coxsackievirus A6 (CVA6) virus A-particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5xs5:
Structure of Coxsackievirus A6 (CVA6) virus procapsid particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Cheng T, Li SW

PDB-5xs7:
Structure of Coxsackievirus A6 (CVA6) virus A-particle in complex with the neutralizing antibody fragment 1D5
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5xnl:
Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-5xnm:
Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-5xnn:
Structure of M-LHCII and CP24 complexes in the stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-5xno:
Structure of M-LHCII and CP24 complexes in the unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-5w0s:
GroEL using cryoEM
Method: single particle / : Roh SH, Chiu W

PDB-5xlr:
Structure of SARS-CoV spike glycoprotein
Method: single particle / : Gui M, Song W, Xiang Y, Wang X

PDB-5h0r:
RNA dependent RNA polymerase ,vp4,dsRNA
Method: single particle / : Li X, Zhou N, Chen W, Zhu B, Wang X, Xu B, Wang J, Liu H, Cheng L

PDB-5h0s:
EM Structure of VP1A and VP1B
Method: single particle / : Li X, Zhou N, Xu B, Chen W, Zhu B, Wang X, Wang J, Liu H, Cheng L

PDB-5wrg:
SARS-CoV spike glycoprotein
Method: single particle / : Gui M, Song W, Xiang Y, Wang X

PDB-5h1b:
Human RAD51 presynaptic complex
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

PDB-5h1c:
Human RAD51 post-synaptic complexes
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

PDB-5g06:
Cryo-EM structure of yeast cytoplasmic exosome
Method: single particle / : Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW

PDB-5jnx:
The 6.6 A cryo-EM structure of the full-length human NPC1 in complex with the cleaved glycoprotein of Ebola virus
Method: single particle / : Gong X, Qian HW, Zhou XH, Wu JP, Wan T, Shi Y, Gao F, Zhou Q, Yan N

PDB-3jd8:
cryo-EM structure of the full-length human NPC1 at 4.4 angstrom
Method: single particle / : Gong X, Qian HW, Zhou XH, Wu JP, Zhou Q, Yan N

PDB-3jcu:
Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
Method: single particle / : Wei XP, Zhang XZ, Su XD, Cao P, Liu XY, Li M, Chang WR, Liu ZF

PDB-3jb6:
In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH

PDB-3jb7:
In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH

PDB-3j9k:
Structure of Dark apoptosome in complex with Dronc CARD domain
Method: single particle / : Pang Y, Bai X, Yan C, Hao Q, Chen Z, Wang J, Scheres SHW, Shi Y

PDB-3j9l:
Structure of Dark apoptosome from Drosophila melanogaster
Method: single particle / : Pang Y, Bai X, Yan C, Hao Q, Chen Z, Wang J, Scheres SHW, Shi Y

PDB-3j8h:
Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution
Method: single particle / : Yan Z, Bai X, Yan C, Wu J, Scheres SHW, Shi Y, Yan N

PDB-4a0o:
Symmetry-free cryo-EM map of TRiC in the nucleotide-free (apo) state
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-4a0v:
model refined against the Symmetry-free cryo-EM map of TRiC-AMP-PNP
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-4a0w:
model built against symmetry-free cryo-EM map of TRiC-ADP-AlFx
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-4a13:
model refined against symmetry-free cryo-EM map of TRiC-ADP
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-3j02:
Lidless D386A Mm-cpn in the pre-hydrolysis ATP-bound state
Method: single particle / : Zhang J, Ma B, DiMaio F, Douglas NR, Joachimiak L, Baker D, Frydman J, Levitt M, Chiu W

PDB-3j03:
Lidless Mm-cpn in the closed state with ATP/AlFx
Method: single particle / : Zhang J, Ma B, DiMaio F, Douglas NR, Joachimiak L, Baker D, Frydman J, Levitt M, Chiu W

PDB-1kju:
Ca2+-ATPase in the E2 State
Method: helical / : Xu C, Rice WJ, He W, Stokes DL

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Omokage search with filter

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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