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Showing all 16 items for author: w. & baumeister

PDB-5uz7:
Volta phase plate cryo-electron microscopy structure of a calcitonin receptor-heterotrimeric Gs protein complex
Method: single particle / : Liang YL, Khoshouei M, Radjainia M, Zhang Y, Glukhova A, Tarrasch J, Thal DM, Furness SGB, Christopoulos G, Coudrat T, Danev R, Baumeister W, Miller LJ, Christopoulos A, Kobilka BK, Wootten D, Skiniotis G, Sexton PM

PDB-5ni1:
CryoEM structure of haemoglobin at 3.2 A determined with the Volta phase plate
Method: single particle / : Khoshouei M, Radjainia M, Bunker R, Baumeister W, Danev R

PDB-5mp9:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpa:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpb:
26S proteasome in presence of AMP-PNP (s3)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpc:
26S proteasome in presence of BeFx (s4)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpd:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpe:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5flm:
Structure of transcribing mammalian RNA polymerase II
Method: single particle / : Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P

PDB-5a5b:
Structure of the 26S proteasome-Ubp6 complex
Method: single particle / : Aufderheide A, Beck F, Stengel F, Hartwig M, Schweitzer A, Pfeifer G, Goldberg AL, Sakata E, Baumeister W, Foerster F

PDB-4v1m:
Architecture of the RNA polymerase II-Mediator core transcription initiation complex
Method: single particle / : Plaschka C, Lariviere L, Wenzeck L, Hemann M, Tegunov D, Petrotchenko EV, Borchers CH, Baumeister W, Herzog F, Villa E, Cramer P

PDB-4v1n:
Architecture of the RNA polymerase II-Mediator core transcription initiation complex
Method: single particle / : Plaschka C, Lariviere L, Wenzeck L, Hemann M, Tegunov D, Petrotchenko EV, Borchers CH, Baumeister W, Herzog F, Villa E, Cramer P

PDB-4v1o:
Architecture of the RNA polymerase II-Mediator core transcription initiation complex
Method: single particle / : Plaschka C, Lariviere L, Wenzeck L, Hemann M, Tegunov D, Petrotchenko EV, Borchers CH, Baumeister W, Herzog F, Villa E, Cramer P

PDB-4cr2:
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome
Method: single particle / : Unverdorben P, Beck F, Sledz P, Schweitzer A, Pfeifer G, Plitzko JM, Baumeister W, Foerster F

PDB-4cr3:
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome
Method: single particle / : Unverdorben P, Beck F, Sledz P, Schweitzer A, Pfeifer G, Plitzko JM, Baumeister W, Foerster F

PDB-4cr4:
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome
Method: single particle / : Unverdorben P, Beck F, Sledz P, Schweitzer A, Pfeifer G, Plitzko JM, Baumeister W, Foerster F

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Omokage search with filter

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

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