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Showing 1 - 50 of 398 items for author: s. & li

PDB-5oxe:
Structure of major capsid protein VP1 of Aeropyrum pernix bacilliform virus 1 APBV1
Method: single particle / : Huiskonen JT, Ptchelkine D, Phillpps SEV

PDB-6b3q:
Cryo-EM structure of human insulin degrading enzyme in complex with insulin
Method: single particle / : Liang WG, Zhang Z, Bailey LJ, Kossiakoff AA, Tan YZ, Wei H, Carragher B, Potter SC, Tang WJ

PDB-6bfu:
Glycan shield and fusion activation of a deltacoronavirus spike glycoprotein fine-tuned for enteric infections
Method: single particle / : Xiong X, Tortorici MA, Snijder S, Yoshioka C, Walls AC, Li W, McGuire AT, Rey FA, Bosch BJ, Veesler D

PDB-5n9y:
The full-length structure of ZntB
Method: single particle / : Cornelius G, Stetsenko A, Scheres SHW, Slotboom DJ, Guskov A

PDB-5uz5:
S. cerevisiae U1 snRNP
Method: single particle / : Li X, Liu S, Jiang J, Zhang L, Espinosa S, Hill RC, Hansen KC, Zhou ZH, Zhao R

PDB-5y6p:
Structure of the phycobilisome from the red alga Griffithsia pacifica
Method: single particle / : Zhang J, Ma JF, Liu DS, Sun S, Sui SF

PDB-6az0:
Mitochondrial ATPase Protease YME1
Method: single particle / : Puchades C, Rampello AJ, Shin M, Giuliano C, Wiseman RL, Glynn SE, Lander GC

PDB-6b7y:
Cryo-EM structure of human insulin degrading enzyme
Method: single particle / : Liang WG, Zhang Z, Bailey LJ, Kossiakoff AA, Tan YZ, Wei H, Carragher B, Potter SC, Tang WJ

PDB-6ehl:
Model of the Ebola virus nucleoprotein in recombinant nucleocapsid-like assemblies
Method: subtomogram averaging / : Wan W, Kolesnikova L, Clarke M, Koehler A, Noda T, Becker S, Briggs JAG

PDB-6ehm:
Model of the Ebola virus nucleocapsid subunit from recombinant virus-like particles
Method: subtomogram averaging / : Wan W, Kolesnikova L, Clarke M, Koehler A, Noda T, Becker S, Briggs JAG

PDB-5vt0:
Escherichia coli 6S RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoenzyme
Method: single particle / : Chen J, Darst SA

PDB-6baa:
Cryo-EM structure of the pancreatic beta-cell KATP channel bound to ATP and glibenclamide
Method: single particle / : Martin GM, Yoshioka C, Shyng SL

PDB-5w3s:
Cryo-electron microscopy structure of a TRPML3 ion channel
Method: single particle / : Hirschi M, Herzik MA, Wie J, Suo Y, Borschel WF, Ren D, Lander GC, Lee SY

PDB-5m50:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AP, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5m54:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AJ, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5m5c:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AP, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5y0a:
Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree
Method: single particle / : Wang JQ, Lok SM

PDB-5ogw:
Cryo-EM structure of jasplakinolide-stabilized malaria parasite F-actin at near-atomic resolution
Method: single particle / : Pospich S, Kumpula EP, von der Ecken J, Vahokoski J, Kursula I, Raunser S

PDB-5wlc:
The complete structure of the small subunit processome
Method: single particle / : Barandun J, Chaker-Margot M, Hunziker M, Klinge S

PDB-5xs4:
Structure of Coxsackievirus A6 (CVA6) virus A-particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5xs5:
Structure of Coxsackievirus A6 (CVA6) virus procapsid particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Cheng T, Li SW

PDB-5xs7:
Structure of Coxsackievirus A6 (CVA6) virus A-particle in complex with the neutralizing antibody fragment 1D5
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5xym:
Large subunit of Mycobacterium smegmatis
Method: single particle / : Li Z, Ge X, Zhang Y, Zheng L, Sanyal S, Gao N

PDB-5xyu:
Small subunit of Mycobacterium smegmatis ribosome
Method: single particle / : Li Z, Zhang Y, Zheng L, Ge X, Sanyal S, Gao N

PDB-5m3l:
Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris hemoglobin
Method: single particle / : Afanasyev P, Linnemayr-Seer C, Ravelli RBG, Matadeen R, De Carlo S, Alewijnse B, Portugal RV, Pannu NS, Schatz M, van Heel M

PDB-5o8o:
N. crassa Tom40 model based on cryo-EM structure of the TOM core complex at 6.8 A
Method: single particle / : Bausewein T, Mills DJ, Nussberger S, Nitschke B, Kuehlbrandt W

PDB-5v6p:
CryoEM structure of the ERAD-associated E3 ubiquitin-protein ligase HRD1
Method: single particle / : Schoebel S, Mi W, Stein A, Rapoport TA, Liao M

PDB-5v7v:
Cryo-EM structure of ERAD-associated E3 ubiquitin-protein ligase component HRD3
Method: single particle / : Mi W, Schoebel S, Stein A, Rapoport TA, Liao M

PDB-6alf:
CryoEM structure of crosslinked E.coli RNA polymerase elongation complex
Method: single particle / : Kang JY, Darst SA

PDB-6alg:
CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex
Method: single particle / : Kang JY, Darst SA

PDB-6alh:
CryoEM structure of E.coli RNA polymerase elongation complex
Method: single particle / : Kang JY, Darst SA

PDB-5u07:
CRISPR RNA-guided surveillance complex
Method: single particle / : Xiao Y, Luo M, Hayes RP, Kim J, Ng S, Ding F, Liao M, Ke A

PDB-5u0a:
CRISPR RNA-guided surveillance complex
Method: single particle / : Xiao Y, Luo M, Hayes RP, Kim J, Ng S, Ding F, Liao M, Ke A

PDB-5xmi:
Cryo-EM Structure of the ATP-bound VPS4 mutant-E233Q hexamer (masked)
Method: single particle / : Sun S, Li L, Yang F, Wang X, Fan F, Li X, Wang H, Sui S

PDB-5xmk:
Cryo-EM structure of the ATP-bound Vps4 mutant-E233Q complex with Vta1 (masked)
Method: single particle / : Sun S, Li L, Yang F, Wang X, Fan F, Li X, Wang H, Sui S

PDB-5nv3:
Structure of Rubisco from Rhodobacter sphaeroides in complex with CABP
Method: single particle / : Bracher A, Milicic G, Ciniawsky S, Wendler P, Hayer-Hartl M, Hartl FU

PDB-5uzb:
Cryo-EM structure of the MAL TIR domain filament
Method: helical / : Ve T, Vajjhala PR, Hedger A, Croll T, DiMaio F, Horsefield S, Yu X, Lavrencic P, Hassan Z, Morgan GP, Mansell A, Mobli M, O'Carrol A, Chauvin B, Gambin Y, Sierecki E, Landsberg MJ, Stacey KJ, Egelman EH, Kobe B

PDB-5vy9:
S. cerevisiae Hsp104:casein complex, Middle Domain Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5w3f:
Yeast tubulin polymerized with GTP in vitro
Method: helical / : Howes SC, Geyer EA, LaFrance B, Zhang R, Kellogg EH, Westermann S, Rice LM, Nogales E

PDB-5w3h:
Yeast microtubule stabilized with epothilone
Method: helical / : Howes SC, Geyer EA, LaFrance B, Zhang R, Kellogg EH, Westermann S, Rice LM, Nogales E

PDB-5w3j:
Yeast microtubule stabilized with Taxol assembled from mutated tubulin
Method: helical / : Howes SC, Geyer EA, LaFrance B, Zhang R, Kellogg EH, Westermann S, Rice LM, Nogales E

PDB-5w7g:
An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation
Method: helical / : Kasson P, DiMaio F, Yu X, Lucas-Staat S, Krupovic M, Schouten S, Prangishvili D, Egelman E

PDB-5vjh:
Closed State CryoEM Reconstruction of Hsp104:ATPyS and FITC casein
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vy8:
S. cerevisiae Hsp104-ADP complex
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vya:
S. cerevisiae Hsp104:casein complex, Extended Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5nd8:
Hibernating ribosome from Staphylococcus aureus (Unrotated state)
Method: single particle / : Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

PDB-5nd9:
Hibernating ribosome from Staphylococcus aureus (Rotated state)
Method: single particle / : Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

PDB-5nzr:
The structure of the COPI coat leaf
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzs:
The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzt:
The structure of the COPI coat linkage I
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Major update of PDB

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