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Showing all 28 items for author: richard & j. & kuhn

PDB-5uhy:
A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection
Method: single particle / : Hasan SS, Miller A, Sapparapu G, Fernandez E, Klose T, Long F, Fokine A, Porta JC, Jiang W, Diamond MS, Crowe Jr JE, Kuhn RJ, Rossmann MG

PDB-5u4w:
Cryo-EM Structure of Immature Zika Virus
Method: single particle / : Mangala Prasad V, Miller AS, Klose T, Sirohi D, Buda G, Jiang W, Kuhn RJ, Rossmann MG

PDB-3j8d:
Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5
Method: single particle / : Zhang XZ, Sheng J, Austin SK, Hoornweg T, Smit JM, Kuhn RJ, Diamond MS, Rossmann MG

PDB-4uom:
Electron Cryo-microscopy of Venezuelan Equine Encephalitis Virus TC- 83 in complex with neutralizing antibody Fab F5
Method: single particle / : Porta J, Jose J, Roehrig JT, Blair CD, Kuhn RJ, Rossmann MG

PDB-4uok:
Electron Cryo-microscopy of Venezuelan Equine Encephalitis Virus TC-83 in complex with neutralizing antibody Fab 3B4C-4
Method: single particle / : Porta J, Jose J, Roehrig JT, Blair CD, Kuhn RJ, G Rossmann M

PDB-4c0u:
Cryo-EM reconstruction of enterovirus 71 in complex with a neutralizing antibody E18
Method: single particle / : Plevka P, Perera R, Cardosa J, Suksatu A, Kuhn RJ, Rossmann MG

PDB-4c0y:
Cryo-EM reconstruction of empty enterovirus 71 in complex with a neutralizing antibody E18
Method: single particle / : Plevka P, Perera R, Cardosa J, Suksatu A, Kuhn RJ, Rossmann MG

PDB-4c10:
Cryo-EM reconstruction of empty enterovirus 71 in complex with a neutralizing antibody E19
Method: single particle / : Plevka P, Perera R, Cardosa J, Suksatu A, Kuhn RJ, Rossmann MG

PDB-3j35:
Cryo-EM reconstruction of Dengue virus at 37 C
Method: single particle / : Zhang XZ, Sheng J, Plevka P, Kuhn RJ, Diamond MS, Rossmann MG

PDB-3j0b:
cryo-EM reconstruction of West Nile virus
Method: single particle / : Zhang W, Kaufmann B, Chipman PR, Kuhn RJ, Rossmann MG

PDB-3j0f:
Sindbis virion
Method: single particle / : Tang J, Jose J, Zhang W, Chipman P, Kuhn RJ, Baker TS

PDB-3muw:
Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus
Method: single particle / : Li L, Jose J, Xiang Y, Kuhn RJ, Rossmann MG

PDB-3ixx:
The pseudo-atomic structure of West Nile immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
Method: single particle / : Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH

PDB-3ixy:
The pseudo-atomic structure of dengue immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
Method: single particle / : Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH

PDB-3c6r:
Low pH Immature Dengue Virus
Method: single particle / : Yu I, Zhang W, Holdway HA, Li L, Kostyuchenko VA, Chipman PR, Kuhn RJ, Rossmann MG, Chen J

PDB-2of6:
Structure of immature West Nile virus
Method: single particle / : Zhang Y, Kaufmann B, Chipman PR, Kuhn RJ, Rossmann MG

PDB-2b6b:
Cryo EM structure of Dengue complexed with CRD of DC-SIGN
Method: single particle / : Pokidysheva E, Zhang Y, Battisti AJ, Bator-Kelly CM, Chipman PR, Gregorio G, Hendrickson WA, Kuhn RJ, Rossmann MG

PDB-1z8y:
Mapping the E2 Glycoprotein of Alphaviruses
Method: single particle / : Mukhopadhyay S, Zhang W, Gabler S, Chipman PR, Strauss EG, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

PDB-1z7z:
Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi
Method: single particle / : Xiao C, Bator-Kelly CM, Rieder E, Chipman PR, Craig A, Kuhn RJ, Wimmer E, Rossmann MG

PDB-1tge:
The structure of immature Dengue virus at 12.5 angstrom
Method: single particle / : Zhang Y, Zhang W, Ogata S, Clements D, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

PDB-1thd:
COMPLEX ORGANIZATION OF DENGUE VIRUS E PROTEIN AS REVEALED BY 9.5 ANGSTROM CRYO-EM RECONSTRUCTION
Method: single particle / : Zhang Y, Zhang W, Ogata S, Clements D, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

PDB-1nn8:
CryoEM structure of poliovirus receptor bound to poliovirus
Method: single particle / : He Y, Mueller S, Chipman PR, Bator CM, Peng X, Bowman VD, Mukhopadhyay S, Wimmer E, Kuhn RJ, Rossmann MG

PDB-1na4:
The structure of immature Yellow Fever virus particle
Method: single particle / : Zhang Y, Corver J, Chipman PR, Lenches E, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG

PDB-1p58:
Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction
Method: single particle / : Zhang W, Chipman PR, Corver J, Johnson PR, Zhang Y, Mukhopadhyay S, Baker TS, Strauss JH, Rossmann MG, Kuhn RJ

PDB-1n6g:
The structure of immature Dengue-2 prM particles
Method: single particle / : Zhang Y, Corver J, Chipman PR, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG

PDB-1ld4:
Placement of the Structural Proteins in Sindbis Virus
Method: single particle / : Zhang W, Mukhopadhyay S, Pletnev SV, Baker TS, Kuhn RJ, Rossmann MG

PDB-1m11:
structural model of human decay-accelerating factor bound to echovirus 7 from cryo-electron microscopy
Method: single particle / : He Y, Lin F, Chipman PR, Bator CM, Baker TS, Shoham M, Kuhn RJ, Medof ME, Rossmann MG

PDB-1k4r:
Structure of Dengue Virus
Method: single particle / : Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker TS, Strauss JH

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Major update of PDB

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  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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