[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 10 items for author: p. & zhu

PDB-5xnl:
Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-5xnm:
Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-5xnn:
Structure of M-LHCII and CP24 complexes in the stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-5xno:
Structure of M-LHCII and CP24 complexes in the unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Method: single particle / : Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M

PDB-3jb8:
Insight into Three-dimensional structure of Maize Chlorotic Mottle Virus Revealed by Single Particle Analysis
Method: single particle / : Wang CY, Zhang QF, Gao YZ, Zhou XP, Ji G, Huang XJ, Hong J, Zhang CX

PDB-3j6q:
Identification of the active sites in the methyltransferases of a transcribing dsRNA virus
Method: single particle / : Zhu B, Yang C, Liu H, Cheng L, Song F, Zeng S, Huang X, Ji G, Zhu P

PDB-3zif:
Cryo-EM structures of two intermediates provide insight into adenovirus assembly and disassembly
Method: single particle / : Cheng L, Huang X, Li X, Xiong W, Sun W, Yang C, Zhang K, Wang Y, Liu H, Ji G, Sun F, Zheng C, Zhu P

PDB-3j17:
Structure of a transcribing cypovirus by cryo-electron microscopy
Method: single particle / : Yang C, Ji G, Liu H, Zhang K, Liu G, Sun F, Zhu P, Cheng L

PDB-3iz3:
CryoEM structure of cytoplasmic polyhedrosis virus
Method: single particle / : Cheng L, Sun J, Zhang K, Mou Z, Huang X, Ji G, Sun F, Zhang J, Zhu P

PDB-3k1q:
Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics
Method: single particle / : Cheng LP, Zhu J, Hiu WH, Zhang XK, Honig B, Fang Q, Zhou ZH

+
About EMN search

-
News

-
Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

+
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more