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Showing all 7 items for author: j. & m. & berger

PDB-5tcp:
Near-atomic resolution cryo-EM structure of the periplasmic domains of PrgH and PrgK
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5tcq:
Near-atomic resolution cryo-EM structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5tcr:
Atomic model of the Salmonella SPI-1 type III secretion injectisome basal body proteins InvG, PrgH, and PrgK
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5jyg:
Cryo-EM structure of the MamK filament at 6.5 A
Method: helical / : Bergeron JRC, Hutto R, Kollman JM

PDB-3j83:
Heptameric EspB Rosetta model guided by EM density
Method: single particle / : Solomonson M, DiMaio F, Strynadka NCJ

PDB-4ce4:
39S large subunit of the porcine mitochondrial ribosome
Method: single particle / : Greber BJ, Boehringer D, Leitner A, Bieri P, Voigts-Hoffmann F, Erzberger JP, Leibundgut M, Aebersold R, Ban N

PDB-2iy3:
Structure of the E. Coli Signal Regognition Particle
Method: single particle / : Schaffitzel C, Oswald M, Berger I, Ishikawa T, Abrahams JP, Koerten HK, Koning RI, Ban N

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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EM Navigator & Yorodumi renewed

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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