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Showing all 50 items for author: j. & jiang

PDB-5vos:
VGSNKGAIIGL from Amyloid Beta determined by MicroED
Method: electron crystallography / : Rodriguez JA, Sawaya MR, Cascio D, Eisenberg DS, Griner SL, Gonen T

PDB-6bcj:
cryo-EM structure of TRPM4 in apo state with short coiled coil at 3.1 angstrom resolution
Method: single particle / : Guo J, She J, Chen Q, Bai X, Jiang Y

PDB-6bcl:
cryo-EM structure of TRPM4 in apo state with long coiled coil at 3.5 angstrom resolution
Method: single particle / : Guo J, She J, Chen Q, Bai X, Jiang Y

PDB-6bco:
cryo-EM structure of TRPM4 in ATP bound state with short coiled coil at 2.9 angstrom resolution
Method: single particle / : Guo J, She J, Chen Q, Bai X, Jiang Y

PDB-6bcq:
cryo-EM structure of TRPM4 in ATP bound state with long coiled coil at 3.3 angstrom resolution
Method: single particle / : Guo J, She J, Chen Q, Bai X, Jiang Y

PDB-5uz5:
S. cerevisiae U1 snRNP
Method: single particle / : Li X, Liu S, Jiang J, Zhang L, Espinosa S, Hill RC, Hansen KC, Zhou ZH, Zhao R

PDB-5yhq:
Cryo-EM Structure of CVA6 VLP
Method: single particle / : Chen J, Zhang C, Huang Z, Cong Y

PDB-5wpq:
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs in closed I conformation at 3.64 Angstrom resolution
Method: single particle / : Chen Q, She J, Guo J, Bai X, Jiang Y

PDB-5wpt:
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs in closed II conformation at 3.75 Angstrom resolution
Method: single particle / : Chen Q, She J, Guo J, Bai X, Jiang Y

PDB-5wpv:
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs at 3.59 Angstrom resolution
Method: single particle / : Chen Q, She J, Guo J, Bai X, Jiang Y

PDB-5m50:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AP, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5m54:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AJ, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5m5c:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AP, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5vzl:
cryo-EM structure of the Cas9-sgRNA-AcrIIA4 anti-CRISPR complex
Method: single particle / : Jiang F, Liu JJ, Nogales E, Doudna JA

PDB-5vku:
An atomic structure of the human cytomegalovirus (HCMV) capsid with its securing layer of pp150 tegument protein
Method: single particle / : Yu X, Jih J, Jiang J, Zhou H

PDB-5uhy:
A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection
Method: single particle / : Hasan SS, Miller A, Sapparapu G, Fernandez E, Klose T, Long F, Fokine A, Porta JC, Jiang W, Diamond MS, Crowe Jr JE, Kuhn RJ, Rossmann MG

PDB-5uu5:
Bacteriophage P22 mature virion capsid protein
Method: single particle / : Hryc CF, Chen DH, Afonine PV, Jakana J, Wang Z, Haase-Pettingell C, Jiang W, Adams PD, King JA, Schmid MF, Chiu W

PDB-5u4w:
Cryo-EM Structure of Immature Zika Virus
Method: single particle / : Mangala Prasad V, Miller AS, Klose T, Sirohi D, Buda G, Jiang W, Kuhn RJ, Rossmann MG

PDB-5knz:
Human Islet Amyloid Polypeptide Segment 19-SGNNFGAILSS-29 with Early Onset S20G Mutation Determined by MicroED
Method: electron crystallography / : Krotee PAL, Rodriguez JA, Sawaya MR, Cascio D, Shi D, Nannenga BL, Hattne J, Reyes FE, Gonen T, Eisenberg DS

PDB-5ko0:
Human Islet Amyloid Polypeptide Segment 15-FLVHSSNNFGA-25 Determined by MicroED
Method: electron crystallography / : Krotee PAL, Rodriguez JA, Sawaya MR, Cascio D, Shi D, Nannenga BL, Hattne J, Reyes FE, Gonen T, Eisenberg DS

PDB-3jbm:
Electron cryo-microscopy of a virus-like particle of orange-spotted grouper nervous necrosis virus
Method: single particle / : Xie J, Li K, Gao Y, Huang R, Lai Y, Shi Y, Yang S, Zhu G, Zhang Q, He J

PDB-5hi9:
Structure of the full-length TRPV2 channel by cryo-electron microscopy
Method: single particle / : Huynh KW, Cohen MR, Jiansen J, Samanta A, Lodowski DT, Zhou ZH, Moiseenkova-Bell VY

PDB-3jau:
The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
Method: single particle / : Fan C, Ye XH, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y

PDB-3jbu:
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Method: single particle / : Zhang J, Pan XJ, Yan KG, Sun S, Gao N, Sui SF

PDB-3jbv:
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Method: single particle / : Zhang J, Pan XJ, Yan KG, Sun S, Gao N, Sui SF

PDB-3jcd:
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y

PDB-3jce:
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y

PDB-4znn:
MicroED structure of the segment, GVVHGVTTVA, from the A53T familial mutant of Parkinson's disease protein, alpha-synuclein residues 47-56
Method: electron crystallography / : Rodriguez JA, Ivanova M, Sawaya MR, Cascio D, Reyes F, Shi D, Johnson L, Guenther E, Sangwan S, Hattne J, Nannenga B, Brewster AS, Messerschmidt M, Boutet S, Sauter NK, Gonen T, Eisenberg DS

PDB-4ril:
Structure of the amyloid forming segment, GAVVTGVTAVA, from the NAC domain of Parkinson's disease protein alpha-synuclein, residues 68-78, determined by electron diffraction
Method: electron crystallography / : Rodriguez JA, Ivanova M, Sawaya MR, Cascio D, Reyes F, Shi D, Johnson L, Guenther E, Sangwan S, Hattne J, Nannenga B, Brewster AS, Messerschmidt M, Boutet S, Sauter NK, Gonen T, Eisenberg DS

PDB-3jay:
Atomic model of transcribing cytoplasmic polyhedrosis virus
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jaz:
Atomic model of cytoplasmic polyhedrosis virus with ATP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb0:
Atomic model of cytoplasmic polyhedrosis virus with GTP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb1:
Atomic model of cytoplasmic polyhedrosis virus with SAM
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb2:
Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb3:
Atomic model of cytoplasmic polyhedrosis virus with SAM, GTP and ATP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3j9c:
CryoEM single particle reconstruction of anthrax toxin protective antigen pore at 2.9 Angstrom resolution
Method: single particle / : Jiang J, Pentelute BL, Collier RJ, Zhou ZH

PDB-3j7v:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j7w:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j7x:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j6c:
Cryo-EM structure of MAVS CARD filament
Method: helical / : Xu H, He X, Zheng H, Huang LJ, Hou F, Yu Z, de la Cruz MJ, Borkowski B, Zhang X, Chen ZJ, Jiang QX

PDB-3j42:
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Method: single particle / : Wang Z, Pennington JG, Jiang W, Rossmann MG

PDB-3j40:
Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling
Method: single particle / : Baker ML, Hryc CF, Zhang Q, Wu W, Jakana J, Haase-Pettingell C, Afonine PV, Adams PD, King JA, Jiang W, Chiu W

PDB-3j32:
An asymmetric unit map from electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)
Method: single particle / : Zhang Q, Dai X, Cong Y, Zhang J, Chen DH, Dougherty M, Wang J, Ludtke S, Schmid MF, Chiu W

PDB-3izx:
3.1 Angstrom cryoEM structure of cytoplasmic polyhedrosis virus
Method: single particle / : Yu X, Ge P, Jiang J, Atanasov I, Zhou ZH

PDB-2xyy:
De Novo model of Bacteriophage P22 procapsid coat protein
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

PDB-2xyz:
De Novo model of Bacteriophage P22 virion coat protein
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

PDB-3k1q:
Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics
Method: single particle / : Cheng LP, Zhu J, Hiu WH, Zhang XK, Honig B, Fang Q, Zhou ZH

PDB-3bbu:
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Method: single particle / : Jiang L, Abrahams JP

PDB-3bbv:
The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Method: single particle / : Jiang L, Abrahams JP

PDB-3bbx:
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Method: single particle / : Jiang L, Abrahams JP

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Major update of PDB

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