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Showing all 20 items for author: d. & clare

PDB-5nbz:
Wzz dodecamer fitted by MDFF to the Wzz experimental map from cryo-EM
Method: single particle / : Ford RC, Kargas V, Collins RF, Whitfield C, Clarke BR, Siebert A, Bond PJ, Clare DK

PDB-5a79:
Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM
Method: single particle / : Clare DK, Pechnikova E, Skurat E, Makarov V, Sokolova OS, Solovyev AG, V Orlova E

PDB-5a7a:
Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM
Method: single particle / : Clare DK, Pechnikova E, Skurat E, Makarov V, Sokolova OS, Solovyev AG, V Orlova E

PDB-4d2q:
Negative-stain electron microscopy of E. coli ClpB mutant E432A (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

PDB-4d2u:
Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

PDB-4d2x:
Negative-stain electron microscopy of E. coli ClpB of Y503D hyperactive mutant (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

PDB-2m5k:
Atomic-resolution structure of a doublet cross-beta amyloid fibril
Method: single particle / : Fitzpatrick AWP, Debelouchina GT, Bayro MJ, Clare DK, Caporini MA, Bajaj VS, Jaroniec CP, Wang L, Ladizhansky V, Muller S, MacPhee CE, Waudby CA, Mott HR, de Simone A, Knowles TPJ, Saibil HR, Vendruscolo M, Orlova EV, Griffin RG, Dobson CM

PDB-2m5m:
Atomic-resolution structure of a triplet cross-beta amyloid fibril
Method: single particle / : Fitzpatrick AWP, Debelouchina GT, Bayro MJ, Clare DK, Caporini MA, Bajaj VS, Jaroniec CP, Wang L, Ladizhansky V, Muller S, MacPhee CE, Waudby CA, Mott HR, de Simone A, Knowles TPJ, Saibil HR, Vendruscolo M, Orlova EV, Griffin RG, Dobson CM

PDB-3zpk:
Atomic-resolution structure of a quadruplet cross-beta amyloid fibril
Method: single particle / : Fitzpatrick AwP, Debelouchina GT, Bayro MJ, Clare DK, Caporini MA, Bajaj VS, Jaroniec CP, Wang L, Ladizhansky V, Muller SA, MacPhee CE, Waudby CA, Mott HR, de Simone A, Knowles TPJ, Saibil HR, Vendruscolo M, Orlova EV, Griffin RG, Dobson CM

PDB-4aaq:
ATP-triggered molecular mechanics of the chaperonin GroEL
Method: single particle / : Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR

PDB-4aar:
ATP-triggered molecular mechanics of the chaperonin GroEL
Method: single particle / : Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR

PDB-4aas:
ATP-triggered molecular mechanics of the chaperonin GroEL
Method: single particle / : Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR

PDB-4aau:
ATP-triggered molecular mechanics of the chaperonin GroEL
Method: single particle / : Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR

PDB-4ab2:
ATP-triggered molecular mechanics of the chaperonin GroEL
Method: single particle / : Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR

PDB-4ab3:
ATP-triggered molecular mechanics of the chaperonin GroEL
Method: single particle / : Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR

PDB-2xrp:
Human Doublecortin N-DC Repeat (1MJD) and Mammalian Tubulin (1JFF and 3HKE) Docked into the 8-Angstrom Cryo-EM Map of Doublecortin- Stabilised Microtubules
Method: single particle / : Fourniol FJ, Sindelar CV, Amigues B, Clare DK, Thomas G, Perderiset M, Francis F, Houdusse A, Moores CA

PDB-2xea:
4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA
Method: helical / : Clare DK, Orlova EV

PDB-2cgt:
GROEL-ADP-gp31 COMPLEX
Method: single particle / : Clare DK, Bakkes PJ, van Heerikhuizen H, van der Vies SM, Saibil HR

PDB-2c7c:
FITTED COORDINATES FOR GROEL-ATP7-GROES CRYO-EM COMPLEX (EMD-1180)
Method: single particle / : Ranson NA, Clare DK, Farr GW, Houldershaw D, Horwich AL, Saibil HR

PDB-2c7d:
Fitted coordinates for GroEL-ADP7-GroES Cryo-EM complex (EMD-1181)
Method: single particle / : Ranson NA, Clare DK, Farr GW, Houldershaw D, Horwich AL, Saibil HR

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Major update of PDB

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External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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