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Showing all 48 items for author: c. & c. & liu

PDB-5ujz:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 1
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5uk0:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 2
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5uk1:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5uk2:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5u1f:
CryoEM structure of BG505 DS SOSIP trimer in complex with CD4 and PGT145
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

PDB-5h64:
Cryo-EM structure of mTORC1
Method: single particle / : Yang H, Wang J, Liu M, Chen X, Huang M, Tan D, Dong M, Wong CCL, Wang J, Xu Y, Wang H

PDB-3jbz:
Crystal structure of mTOR docked into EM map of dimeric ATM kinase
Method: single particle / : Lau WCY

PDB-5t5h:
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
Method: single particle / : Liu Z, Gutierrez-Vargas C, Wei J, Grassucci RA, Ramesh M, Espina N, Sun M, Tutuncuoglu B, Madison-Antenucci S, Woolford Jr JL, Tong L, Frank J

PDB-5j8v:
Structure of rabbit ryanodine receptor RyR1 open state activated by calcium ion
Method: single particle / : Wang X, Wei R, Yin C, Sun F

PDB-5kg8:
Rigor myosin X co-complexed with an actin filament
Method: helical / : Sindelar CV, Houdusse A, Sweeney L

PDB-5jzg:
CryoEM structure of the native empty particle of a human rhinovirus C
Method: single particle / : Liu Y, Hill MG, Klose T, Chen Z, Watters KE, Jiang W, Palmenberg AC, Rossmann MG

PDB-5k0u:
CryoEM structure of the full virion of a human rhinovirus C
Method: single particle / : Liu Y, Hill MG, Klose T, Chen Z, Watters KE, Jiang W, Palmenberg AC, Rossmann MG

PDB-5g06:
Cryo-EM structure of yeast cytoplasmic exosome
Method: single particle / : Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW

PDB-5fjb:
Cyclophilin A Stabilize HIV-1 Capsid through a Novel Non- canonical Binding Site
Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P

PDB-3jau:
The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
Method: single particle / : Fan C, Ye XH, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y

PDB-3jci:
2.9 Angstrom Resolution Cryo-EM 3-D Reconstruction of Close-packed PCV2 Virus-like Particles
Method: single particle / : Liu Z, Guo F, Wang F, Li TC, Jiang W

PDB-5an8:
Cryo-electron microscopy structure of rabbit TRPV2 ion channel
Method: single particle / : Zubcevic L, Herzik MAJ, Chung BC, Lander GC, Lee SY

PDB-3j9p:
Structure of the TRPA1 ion channel determined by electron cryo-microscopy
Method: single particle / : Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D

PDB-3j9b:
Electron cryo-microscopy of an RNA polymerase
Method: single particle / : Chang SH, Sun DP, Liang HH, Wang J, Li J, Guo L, Wang XL, Guan CC, Boruah BM, Yuan LM, Feng F, Yang MR, Wojdyla J, Wang JW, Wang MT, Wang HW, Liu YF

PDB-3j8g:
Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit
Method: single particle / : Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y, Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N

PDB-3j7v:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j7w:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j7x:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Method: single particle / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W

PDB-3j6q:
Identification of the active sites in the methyltransferases of a transcribing dsRNA virus
Method: single particle / : Zhu B, Yang C, Liu H, Cheng L, Song F, Zeng S, Huang X, Ji G, Zhu P

PDB-3j7l:
Full virus map of brome mosaic virus
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7m:
Virus model of brome mosaic virus (first half data set)
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7n:
Virus model of brome mosaic virus (second half data set)
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-4v6v:
Tetracycline resistance protein Tet(O) bound to the ribosome
Method: single particle / : Li W, Atkinson GC, Thakor NS, Allas U, Lu C, Chan KY, Tenson T, Schulten K, Wilson KS, Hauryliuk V, Frank J

PDB-3zif:
Cryo-EM structures of two intermediates provide insight into adenovirus assembly and disassembly
Method: single particle / : Cheng L, Huang X, Li X, Xiong W, Sun W, Yang C, Zhang K, Wang Y, Liu H, Ji G, Sun F, Zheng C, Zhu P

PDB-4atu:
Human doublecortin N-DC repeat plus linker, and tubulin (2XRP) docked into an 8A cryo-EM map of doublecortin-stabilised microtubules reconstructed in absence of kinesin
Method: single particle / : Liu JS, Schubert CR, Fu X, Fourniol FJ, Jaiswal JK, Houdusse A, Stultz CM, Moores CA, Walsh CA

PDB-4atx:
Rigor kinesin motor domain with an ordered neck-linker, docked on tubulin dimer, modelled into the 8A cryo-EM map of doublecortin- microtubules decorated with kinesin
Method: single particle / : Liu JS, Schubert CR, Fu X, Fourniol FJ, Jaiswal JK, Houdusse A, Stultz CM, Moores CA, Walsh CA

PDB-2yew:
Modeling Barmah Forest virus structural proteins
Method: single particle / : Kostyuchenko VA, Jakana J, Liu X, Haddow AD, Aung M, Weaver SC, Chiu W, Lok SM

PDB-3j17:
Structure of a transcribing cypovirus by cryo-electron microscopy
Method: single particle / : Yang C, Ji G, Liu H, Zhang K, Liu G, Sun F, Zhu P, Cheng L

PDB-3j0c:
Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map
Method: single particle / : Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W

PDB-3j0g:
Homology model of E3 protein of Venezuelan Equine Encephalitis Virus TC-83 strain fitted with a cryo-EM map
Method: single particle / : Zhang R, Hryc CF, Chiu W

PDB-2w4v:
Isometrically contracting insect asynchronous flight muscle quick frozen after a quick release step
Method: electron tomography / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4g:
ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A QUICK STRETCH STEP
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4h:
Isometrically contracting insect asynchronous flight muscle quick frozen after a quick release step
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4u:
Isometrically contracting insect asynchronous flight muscle quick frozen after a length step
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4w:
Isometrically contracting insect asynchronous flight muscle quick frozen after a quick stretch step
Method: electron tomography / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2xd8:
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

PDB-2w49:
ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4a:
ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4t:
ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2wvw:
Cryo-EM structure of the RbcL-RbcX complex
Method: single particle / : Liu C, Young AL, Starling-Windhof A, Bracher A, Saschenbrecker S, Rao BV, Rao KV, Berninghausen O, Mielke T, Hartl FU, Beckmann R, Hayer-Hartl M

PDB-3c91:
Thermoplasma acidophilum 20S proteasome with an open gate
Method: single particle / : Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y

PDB-3c92:
Thermoplasma acidophilum 20S proteasome with a closed gate
Method: single particle / : Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y

PDB-2o0f:
Docking of the modified RF3 X-ray structure into cryo-EM map of E.coli 70S ribosome bound with RF3
Method: single particle / : Gao H, Zhou Z, Rawat U, Huang C, Bouakaz L, Wang C, Liu Y, Zavialov A, Gursky R, Sanyal S, Ehrenberg M, Frank J, Song H

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Major update of PDB

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