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Showing all 50 items for author: baker, & d

PDB-5urf:
The structure of human bocavirus 1
Method: single particle / : Mietzsch M, Kailasan S, Garrison J, Ilyas M, Chipman P, Kandola K, Jansen M, Spear J, Sousa D, McKenna R, Soderlund-Venermo M, Baker T, Agbandje-McKenna M

PDB-5ipi:
Structure of Adeno-associated virus type 2 VLP
Method: single particle / : Drouin LM, Lins B, Janssen ME, Bennet A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker TS, Agbandje-McKenna M

PDB-5ipk:
Structure of the R432A variant of Adeno-associated virus type 2 VLP
Method: single particle / : Drouin LM, Lins B, Janssen ME, Bennet A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker TS, Agbandje-McKenna M

PDB-3jav:
Structure of full-length IP3R1 channel in the apo-state determined by single particle cryo-EM
Method: single particle / : Fan G, Baker ML, Wang Z, Baker MR, Sinyagovskiy PA, Chiu W, Ludtke SJ, Serysheva II

PDB-3jbq:
Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6
Method: single particle / : Zhang Z, He F, Constantine R, Baker ML, Baehr W, Schmid MF, Wensel TG, Agosto MA

PDB-3jab:
Domain organization and conformational plasticity of the G protein effector, PDE6
Method: single particle / : Zhang Z, He F, Constantine R, Baker ML, Baehr W, Schmid MF, Wensel TG, Agosto MA

PDB-3j9g:
Atomic model of the VipA/VipB, the type six secretion system contractile sheath of Vibrio cholerae from cryo-EM
Method: helical / : Kudryashev M, Wang RY-R, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M

PDB-3j89:
Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies
Method: helical / : Egelman EH, Xu C, DiMaio F, Magnotti E, Modlin C, Yu X, Wright E, Baker D, Conticello VP

PDB-2mme:
Hybrid structure of the Shigella flexneri MxiH Type three secretion system needle
Method: helical / : Demers JP, Habenstein B, Loquet A, Vasa SK, Becker S, Baker D, Lange A, Sgourakis NG

PDB-3j7l:
Full virus map of brome mosaic virus
Method: icosahedral / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7m:
Virus model of brome mosaic virus (first half data set)
Method: icosahedral / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7n:
Virus model of brome mosaic virus (second half data set)
Method: icosahedral / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j6e:
Energy minimized average structure of Microtubules stabilized by GmpCpp
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-3j6f:
Minimized average structure of GDP-bound dynamic microtubules
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-3j6g:
Minimized average structure of microtubules stabilized by taxol
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-4bml:
C-alpha backbone trace of major capsid protein gp39 found in marine virus Syn5.
Method: single particle / : Gipson P, Baker ML, Raytcheva D, Haase-Pettingell C, Piret J, King J, Chiu W

PDB-3j40:
Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling
Method: icosahedral / : Baker ML, Hryc CF, Zhang Q, Wu W, Jakana J, Haase-Pettingell C, Afonine PV, Adams PD, King JA, Jiang W, Chiu W

PDB-3j3x:
Independent reconstruction of Mm-cpn cryo-EM density map from half dataset in the closed state (training map)
Method: single particle / : DiMaio F, Zhang J, Chiu W, Baker D

PDB-3j1v:
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Method: single particle / : Sgourakis NG, Bergeron JRC, Strynadka NJC, Baker D

PDB-3j1w:
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Method: single particle / : Sgourakis NG, Worrall LJ, Strynadka NCJ, Baker D

PDB-3j1x:
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Method: single particle / : Sgourakis NG, Bergeron JRC, Worrall LJ, Strynadka NCJ, Baker D

PDB-3j0f:
Sindbis virion
Method: icosahedral / : Tang J, Jose J, Zhang W, Chipman P, Kuhn RJ, Baker TS

PDB-3j0c:
Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map
Method: icosahedral / : Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W

PDB-3j02:
Lidless D386A Mm-cpn in the pre-hydrolysis ATP-bound state
Method: single particle / : Zhang J, Ma B, DiMaio F, Douglas NR, Joachimiak L, Baker D, Frydman J, Levitt M, Chiu W

PDB-3j03:
Lidless Mm-cpn in the closed state with ATP/AlFx
Method: single particle / : Zhang J, Ma B, DiMaio F, Douglas NR, Joachimiak L, Baker D, Frydman J, Levitt M, Chiu W

PDB-2xyy:
De Novo model of Bacteriophage P22 procapsid coat protein
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

PDB-2xyz:
De Novo model of Bacteriophage P22 virion coat protein
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

PDB-3iys:
Homology model of avian polyomavirus asymmetric unit
Method: icosahedral / : Shen PS, Enderlein D, Nelson CDS, Carter WS, Kawano M, Xing L, Swenson RD, Olson NH, Baker TS, Cheng RH, Atwood WJ, Johne R, Belnap DM

PDB-3iym:
Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling
Method: icosahedral / : Tang J, Pan J, Havens WF, Ochoa WF, Li H, Sinkovits RS, Guu TSY, Ghabrial SA, Nibert ML, Tao JY, Baker TS

PDB-2xd8:
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

PDB-3iyg:
Ca model of bovine TRiC/CCT derived from a 4.0 Angstrom cryo-EM map
Method: single particle / : Cong Y, Baker ML, Ludtke SJ, Frydman J, Chiu W

PDB-3ktt:
Atomic model of bovine TRiC CCT2(beta) subunit derived from a 4.0 Angstrom cryo-EM map
Method: single particle / : Cong Y, Baker ML, Ludtke SJ, Frydman J, Chiu W

PDB-3los:
Atomic Model of Mm-cpn in the Closed State
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

PDB-3iyf:
Atomic Model of the Lidless Mm-cpn in the Open State
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

PDB-3c9v:
C7 Symmetrized Structure of Unliganded GroEL at 4.7 Angstrom Resolution from CryoEM
Method: single particle / : Ludtke SJ, Baker ML, Chen DH, Song JL, Chuang D, Chiu W

PDB-3cau:
D7 symmetrized structure of unliganded GroEL at 4.2 Angstrom resolution by cryoEM
Method: single particle / : Ludtke SJ, Baker ML, Chen DH, Song JL, Chuang D, Chiu W

PDB-1z8y:
Mapping the E2 Glycoprotein of Alphaviruses
Method: icosahedral / : Mukhopadhyay S, Zhang W, Gabler S, Chipman PR, Strauss EG, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

PDB-2cse:
Features of Reovirus Outer-Capsid Protein mu1 Revealed by Electron and Image Reconstruction of the virion at 7.0-A Resolution
Method: icosahedral / : Zhang X, Ji Y, Zhang L, Harrison SC, Marinescu DC, Nibert ML, Baker TS

PDB-1tge:
The structure of immature Dengue virus at 12.5 angstrom
Method: icosahedral / : Zhang Y, Zhang W, Ogata S, Clements D, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

PDB-1thd:
COMPLEX ORGANIZATION OF DENGUE VIRUS E PROTEIN AS REVEALED BY 9.5 ANGSTROM CRYO-EM RECONSTRUCTION
Method: icosahedral / : Zhang Y, Zhang W, Ogata S, Clements D, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

PDB-1na4:
The structure of immature Yellow Fever virus particle
Method: icosahedral / : Zhang Y, Corver J, Chipman PR, Lenches E, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG

PDB-1p58:
Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction
Method: icosahedral / : Zhang W, Chipman PR, Corver J, Johnson PR, Zhang Y, Mukhopadhyay S, Baker TS, Strauss JH, Rossmann MG, Kuhn RJ

PDB-1n6g:
The structure of immature Dengue-2 prM particles
Method: icosahedral / : Zhang Y, Corver J, Chipman PR, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG

PDB-1m0f:
Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy
Method: icosahedral / : Bernal RA, Hafenstein S, Olson NH, Bowman VD, Chipman PR, Baker TS, Fane BA, Rossmann MG

PDB-1m4x:
PBCV-1 virus capsid, quasi-atomic model
Method: icosahedral / : Nandhagopal N, Simpson AA, Gurnon JR, Yan X, Baker TS, Graves MV, Van Etten JL, Rossmann MG

PDB-1ld4:
Placement of the Structural Proteins in Sindbis Virus
Method: icosahedral / : Zhang W, Mukhopadhyay S, Pletnev SV, Baker TS, Kuhn RJ, Rossmann MG

PDB-1m11:
structural model of human decay-accelerating factor bound to echovirus 7 from cryo-electron microscopy
Method: icosahedral / : He Y, Lin F, Chipman PR, Bator CM, Baker TS, Shoham M, Kuhn RJ, Medof ME, Rossmann MG

PDB-1k4r:
Structure of Dengue Virus
Method: icosahedral / : Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker TS, Strauss JH

PDB-1foq:
PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA
Method: single particle / : Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann MG

PDB-1dgi:
Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155
Method: icosahedral / : He Y, Bowman VD, Mueller S, Bator CM, Bella J, Peng X, Baker TS, Wimmer E, Kuhn RJ, Rossmann MG

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